CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10395_at

Gene name
Homology with Arabidopsis Similar to At2g36300: integral membrane Yip1 family protein (HF=3e-1)

Module size 17 genes

NF 0.26

%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 95.2 0.88 Contig10395_at Contig10395 - - 3e-1 At2g36300 integral membrane Yip1 family protein O.I. H.G. S.X.
0.48 63.2 0.92 Contig13286_at Contig13286 - - 2e+1 At5g10620 - O.I. H.G. S.X.
0.40 53.1 0.92 Contig16774_at Contig16774 - - 1e+0 At4g34215 hydrolase O.I. H.G. S.X.
0.36 47.1 0.93 Contig15862_s_at Contig15862 - - 7e-1 At1g69580 transcription factor O.I. H.G. S.X.
0.33 42.6 0.92 HV05A08u_x_at HV05A08u UDP-D-glucuronate decarboxylase - 2e+1 At5g44560 VPS2.2 O.I. H.G. S.X.
0.32 40.3 0.89 Contig18440_at Contig18440 - - 2e+0 At3g56590 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.30 37.0 0.94 Contig13404_at Contig13404 - - 2e+0 At1g76750 unknown protein O.I. H.G. S.X.
0.29 35.5 0.92 Contig12224_at Contig12224 - - 4e-8 At1g22200 unknown protein O.I. H.G. S.X.
0.21 22.6 0.91 Contig11367_s_at Contig11367 - - 3e-4 At4g21450 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.
0.20 21.1 0.90 Contig26429_at Contig26429 - - 5e+0 At3g52790 peptidoglycan-binding LysM domain-containing protein O.I. H.G. S.X.
0.20 21.1 0.91 Contig16125_at Contig16125 - - 7e+0 At4g28397 - O.I. H.G. S.X.
0.19 19.6 0.93 Contig22285_at Contig22285 - - 6e-16 At2g04842 EMB2761 (EMBRYO DEFECTIVE 2761) O.I. H.G. S.X.
0.19 19.6 0.91 Contig4584_s_at Contig4584 - - 5e+0 At5g41810 unknown protein O.I. H.G. S.X.
0.17 16.9 0.92 Contig11797_s_at Contig11797 - - 1e+1 At4g21216 unknown protein O.I. H.G. S.X.
0.17 16.9 0.91 Contig14125_at Contig14125 - - 2e+0 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) O.I. H.G. S.X.
0.13 11.6 0.93 HS05B02u_s_at HS05B02u - - 3e-10 At4g14240 - O.I. H.G. S.X.
0.10 8.4 0.91 Contig7010_at Contig7010 - - 3e-62 At4g29510 PRMT11 (ARGININE METHYLTRANSFERASE 11) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.1 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.9 95.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.4 94.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
2.5 91.9 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
2.4 91.4 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.4 91.4 GSM372991 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.3 90.9 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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