Co-expression analysis

Gene ID Contig10383_at
Gene name
Homology with ArabidopsisSimilar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=6e-4)
Module size 6 genes
NF 0.67
%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig10383_atContig10383--6e-4At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.8092.50.94Contig10382_s_atContig10382--6e-38At5g45190cyclin family proteinO.I.H.G.S.X.
0.7388.70.92Contig10000_s_atContig10000--8e+0At5g05113unknown proteinO.I.H.G.S.X.
0.7388.70.94Contig10001_atContig10001--9e-6At3g01410RNase H domain-containing proteinO.I.H.G.S.X.
0.6784.70.95Contig10380_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
6.097.9GSM161220cold treatment rep2GSE6993Barley low temperature stressLink to GEO
6.097.9GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
5.497.5GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO
5.197.3GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.197.3GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.097.2GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM261029ABA-Late-rep3GSE10328ABA experimentLink to GEO
4.997.1GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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