Co-expression analysis

Gene ID Contig10375_at
Gene name
Homology with ArabidopsisSimilar to At3g08950: electron transport SCO1/SenC family protein (HF=5e-7)
Module size 6 genes
NF 0.41
%ile 57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.95Contig10375_atContig10375--5e-7At3g08950electron transport SCO1/SenC family proteinO.I.H.G.S.X.
0.6784.70.94Contig7589_s_atContig7589--1e-2At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4661.00.94Contig4157_s_atContig4157--1e-25At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3545.10.94Contig4967_atContig4967--5e-13At1g75440UBC16 (ubiquitin-conjugating enzyme 16)O.I.H.G.S.X.
0.2630.40.94Contig7515_atContig7515--8e-9At2g43640signal recognition particle 14 kDa family protein / SRP14 family proteinO.I.H.G.S.X.
0.1919.60.95Contig7336_s_atContig7336--5e+0At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.799.0GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.798.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.998.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.597.6GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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