Co-expression analysis

Gene ID	Contig10370_at
Gene name
Homology with Arabidopsis	Similar to At1g34370: STOP1 (sensitive to proton rhizotoxicity 1) (HF=2e-12)
Module size	6 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.88	Contig10370_at	Contig10370	-	-	2e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.88	Contig19673_at	Contig19673	-	-	4e-23	At1g79580	SMB (SOMBRERO)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig10085_at	Contig10085	-	-	3e+0	At5g17350	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig4657_at	Contig4657	-	-	3e-5	At1g23870	ATTPS9	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig2302_at	Contig2302	-	-	1e-25	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	Contig11552_at	Contig11552	-	-	1e-13	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.3	94.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
3.0	93.8	GSM160822	38% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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