Co-expression analysis

Gene ID	Contig1035_at
Gene name
Homology with Arabidopsis	Similar to At4g02890: UBQ14 (HF=6e-58)
Module size	18 genes
NF	0.35
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.95	Contig1035_at	Contig1035	-	-	6e-58	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig10799_at	Contig10799	-	-	4e-14	At5g38900	DSBA oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig19027_at	Contig19027	-	-	1e+0	At5g05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig11674_at	Contig11674	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig14242_at	Contig14242	-	-	1e+0	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig15382_at	Contig15382	-	-	7e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig15126_at	Contig15126	-	-	5e-2	At1g04590	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig19923_at	Contig19923	-	-	3e-1	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig16664_at	Contig16664	-	-	3e-8	At1g73180	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig423_at	Contig423	-	-	5e-5	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig21025_at	Contig21025	-	-	7e-2	At2g16340	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig18011_at	Contig18011	-	-	2e-3	At3g60840	MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	HV_CEb0003J15r2_at	HV_CEb0003J15r2	-	-	3e+0	At4g08878	inorganic phosphate transporter, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig13248_at	Contig13248	-	-	5e-4	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	HVSMEc0019C19f_at	HVSMEc0019C19f	-	-	0	Atcg00020	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig7984_s_at	Contig7984	-	-	3e-1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig15852_at	Contig15852	-	-	1e-33	At1g29940	NRPA2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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