Co-expression analysis

Gene ID	Contig10310_at
Gene name
Homology with Arabidopsis	Similar to At1g75690: chaperone protein dnaJ-related (HF=8e-3)
Module size	24 genes
NF	0.22
%ile	26.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.86	Contig10310_at	Contig10310	-	-	8e-3	At1g75690	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig21425_at	Contig21425	-	-	6e+0	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	HU05P16u_s_at	HU05P16u	-	-	4e+0	At3g29670	transferase family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig18046_at	Contig18046	-	-	4e-1	At2g11910	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig12100_at	Contig12100	-	-	1e-3	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig14290_at	Contig14290	-	-	9e-15	At5g57030	LUT2 (LUTEIN DEFICIENT 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig13467_at	Contig13467	-	-	5e-10	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig14182_at	Contig14182	-	-	2e+0	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig17591_at	Contig17591	-	-	1e-8	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig8316_s_at	Contig8316	-	-	4e+0	At2g27480	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig15443_at	Contig15443	-	-	1e+1	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig14726_at	Contig14726	-	-	2e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig15220_at	Contig15220	-	-	5e-1	At1g43010	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig21935_at	Contig21935	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig18254_at	Contig18254	-	-	2e-1	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig21722_at	Contig21722	-	-	2e+0	At1g55780	metal ion binding	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig9585_at	Contig9585	-	-	5e-4	At4g26080	ABI1 (ABA INSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.92	HU13I04u_s_at	HU13I04u	-	-	9e-1	At3g49760	AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.90	Contig5175_at	Contig5175	-	-	4e-11	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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