Co-expression analysis

Gene ID	Contig10272_at
Gene name
Homology with Arabidopsis	Similar to At1g22040: kelch repeat-containing F-box family protein (HF=8e-13)
Module size	6 genes
NF	0.43
%ile	60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig10272_at	Contig10272	-	-	8e-13	At1g22040	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig8507_at	Contig8507	-	-	2e-43	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig8096_at	Contig8096	-	-	4e-8	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig3449_s_at	Contig3449	-	-	4e+0	At5g51812	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig561_x_at	Contig561	-	-	3e-1	At5g38200	hydrolase	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig14007_at	Contig14007	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.6	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage