Co-expression analysis

Gene ID	Contig10182_at
Gene name
Homology with Arabidopsis	Similar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=3e-16)
Module size	6 genes
NF	0.89
%ile	98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	Contig10182_at	Contig10182	-	-	3e-16	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.87	Contig2499_s_at	Contig2499	-	-	1e+0	At5g52770	heavy-metal-associated protein-related	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.90	EBro03_SQ006_M03_at	EBro03_SQ006_M03	-	-	8e-1	At3g10210	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.91	EBro03_SQ004_L04_at	EBro03_SQ004_L04	-	-	2e-1	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.87	Contig24573_at	Contig24573	-	-	7e+0	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.90	Contig19551_at	Contig19551	-	-	2e+0	At2g38430	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9	97.1	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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