Co-expression analysis

Gene ID	Contig10162_s_at
Gene name
Homology with Arabidopsis	Similar to At1g74730: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.18
%ile	22.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.93	Contig10162_s_at	Contig10162	-	-	4e-1	At1g74730	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig10348_at	Contig10348	-	-	6e+0	At2g01080	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig16931_at	Contig16931	-	-	2e+0	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig3532_s_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	EBma04_SQ003_H18_s_at	EBma04_SQ003_H18	-	-	4e+0	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig24391_at	Contig24391	-	-	3e+0	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.3	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
21.7	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.2	99.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.4	98.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.8	98.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.7	98.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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