Co-expression analysis

Gene ID Contig10148_at
Gene name
Homology with ArabidopsisSimilar to At5g65700: BAM1 (BARELY ANY MERISTEM 1) (HF=2e-22)
Module size 9 genes
NF 0.48
%ile 67.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.92Contig10148_atContig10148--2e-22At5g65700BAM1 (BARELY ANY MERISTEM 1)O.I.H.G.S.X.
0.6784.70.95Contig20160_atContig20160--8e-2At3g59740receptor lectin kinase 3 (lecRK3)O.I.H.G.S.X.
0.6077.30.93HVSMEb0007P14r2_atHVSMEb0007P14r2--2e+0At5g62130Per1-like protein-relatedO.I.H.G.S.X.
0.6077.30.93Contig17800_s_atContig17800--8e-2At5g25750unknown proteinO.I.H.G.S.X.
0.5369.70.94Contig13137_atContig13137--4e+0At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.4053.10.93Contig14572_atContig14572--3e-5At4g21410protein kinase family proteinO.I.H.G.S.X.
0.4053.10.95Contig15349_atContig15349--2e-1At5g38730pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3545.10.93Contig13638_atContig13638--4e+0At4g25660unknown proteinO.I.H.G.S.X.
0.2427.20.94Contig10899_atContig10899--3e+0At3g63530BB (BIG BROTHER)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.897.0GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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