Co-expression analysis

Gene ID	Contig10118_at
Gene name
Homology with Arabidopsis	Similar to At1g53620: unknown protein (HF=1e-1)
Module size	28 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.94	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	HT09B14u_s_at	HT09B14u	-	-	3e+0	At3g55580	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig20206_at	Contig20206	-	-	6e-3	At1g73010	phosphatase	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.96	rbags21n02_at	rbags21n02	-	-	3e-1	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig25536_at	Contig25536	-	-	1e-1	At1g70120	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig23564_at	Contig23564	-	-	1e+0	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig17672_at	Contig17672	-	-	2e-16	At5g23300	PYRD (pyrimidine d)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig255_at	Contig255	-	-	4e+0	At3g53670	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig17026_at	Contig17026	-	-	1e+0	At1g01770	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig21186_at	Contig21186	-	-	1e-1	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig13517_at	Contig13517	-	-	5e+0	At5g55893	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig1138_at	Contig1138	-	-	2e-14	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig7848_at	Contig7848	-	-	3e-5	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig13261_at	Contig13261	-	-	4e-5	At4g13730	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.97	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.6	92.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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