Co-expression analysis

Gene ID	Contig10097_at
Gene name
Homology with Arabidopsis	Similar to At3g16450: jacalin lectin family protein (HF=4e-1)
Module size	6 genes
NF	0.64
%ile	86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.1	98.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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