Co-expression analysis

Gene ID Contig10068_at
Gene name
Homology with ArabidopsisSimilar to At3g54840: ARA6 (HF=2e+0)
Module size 6 genes
NF 0.63
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.87Contig10068_atContig10068--2e+0At3g54840ARA6O.I.H.G.S.X.
0.8394.00.88Contig10067_s_atContig10067--4e+0At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)O.I.H.G.S.X.
0.6178.70.80Contig16847_atContig16847--2e+0At5g50890-O.I.H.G.S.X.
0.6077.30.87Contig8628_atContig8628--6e-1At1g64370unknown proteinO.I.H.G.S.X.
0.5572.00.89Contig18933_s_atContig18933--7e-5At1g74530unknown proteinO.I.H.G.S.X.
0.3240.30.86HVSMEm0003G22r2_atHVSMEm0003G22r2--5e+0At1g71740unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.199.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
26.199.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
24.599.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
23.999.8GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
18.699.7GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
15.499.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.796.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage