Co-expression analysis

Gene ID	Contig10050_s_at
Gene name
Homology with Arabidopsis	Similar to At2g25052: unknown protein (HF=5e-2)
Module size	7 genes
NF	0.61
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.96	Contig10050_s_at	Contig10050	-	-	5e-2	At2g25052	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.96	Contig10891_s_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig10690_at	Contig10690	-	-	2e-5	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig16415_at	Contig16415	-	-	4e-12	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig9559_at	Contig9559	-	-	2e-5	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig10041_at	Contig10041	-	-	8e-29	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig13879_at	Contig13879	-	-	6e-4	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.1	94.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.0	93.8	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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