Co-expression analysis

Gene ID	Contig10037_at
Gene name
Homology with Arabidopsis	Similar to At5g23760: heavy-metal-associated domain-containing protein (HF=9e-1)
Module size	6 genes
NF	0.66
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig10037_at	Contig10037	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.98	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.2	98.0	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.8	97.8	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.23856.2.S1_at, orthologous to the query gene, Contig10037_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.23856.2.S1_at	At5g23760	-	-	1e-11	At5g53880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.30792.1.A1_at	At5g23760	hypothetical protein	-	3e+0	At5g43520	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.13014.1.S1_a_at	At5g23760	NAC domain protein, IPR003441	-	2e-8	At4g29230	anac075 (Arabidopsis NAC domain containing protein 75)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.15659.1.S1_at	At5g23760	hypothetical protein	-	2e-84	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.182.1.S1_at	At5g23760	hypothetical protein	-	4e-20	At1g24030	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.37739.1.S1_at	At5g23760	hypothetical protein	-	3e-18	At3g61570	GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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