Co-expression analysis

Gene ID Contig10037_at
Gene name
Homology with ArabidopsisSimilar to At5g23760: heavy-metal-associated domain-containing protein (HF=9e-1)
Module size 6 genes
NF 0.66
%ile 87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig10037_atContig10037--9e-1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6784.70.97Contig6337_atContig6337--2e+0At3g10640VPS60.1O.I.H.G.S.X.
0.6784.70.98Contig3806_s_atContig3806--1e-3At2g43710SSI2O.I.H.G.S.X.
0.5572.00.97Contig2821_atContig2821--1e-72At3g116302-cys peroxiredoxin, chloroplast (BAS1)O.I.H.G.S.X.
0.4458.90.97Contig7152_atContig7152--2e-34At3g58600-O.I.H.G.S.X.
0.3342.60.98Contig6905_s_atContig6905--2e+0At4g19620unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.698.2GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.498.1GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.298.0GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.298.0GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.997.9GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.997.9GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.897.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.897.8GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.897.8GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g23760, orthologous to the query gene, Contig10037_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2319.3At5g23760832441heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMPFABVO.I.H.G.S.X.
0.4050.8At2g23430816875ICK1Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.O.I.H.G.S.X.
0.3338.1At3g03120821079ATARFB1C (ADP-ribosylation factor B1C)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.2522.6At5g08210830717MIR834aEncodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGUAGCAGUAGCGGUGGUAAO.I.H.G.S.X.
0.2217.5At5g64180836539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage