Co-expression analysis

Gene ID	Contig10032_at
Gene name
Homology with Arabidopsis	Similar to At5g09850: transcription elongation factor-related (HF=7e-3)
Module size	6 genes
NF	0.49
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.96	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig19726_at	Contig19726	-	-	3e-4	At2g18410	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig8374_at	Contig8374	-	-	5e-1	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig12918_at	Contig12918	-	-	3e+1	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig6509_at	Contig6509	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.5	99.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.3	99.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
9.4	99.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
9.0	98.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.7	98.9	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
8.6	98.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
8.3	98.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
8.3	98.8	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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