Co-expression analysis

Gene ID At5g66470
Gene name GTP binding / RNA binding
Module size 96 genes
NF 0.51
%ile 72.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g66470836779GTP binding / RNA bindingF:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.H.G.S.X.
0.7989.10.94At3g62910825466APG3 (ALBINO AND PALE GREEN)Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.O.I.H.G.S.X.
0.7385.50.91At5g55220835615trigger factor type chaperone family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFVO.I.H.G.S.X.
0.7385.50.91At5g03940830273CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)mutant has Yellow first leaves; Chloroplast Signal Recognition Particle SubunitO.I.H.G.S.X.
0.7284.80.92At2g24060816940translation initiation factor 3 (IF-3) family proteinF:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVAO.I.H.G.S.X.
0.7184.20.92At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.6982.90.93At2g37660818343binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAMO.I.H.G.S.X.
0.6680.10.91At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.H.G.S.X.
0.6680.10.90At5g18660831984PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2)Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.O.I.H.G.S.X.
0.6579.60.92At5g63310836451NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.O.I.H.G.S.X.
0.6478.90.91At1g14030837964ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putativeF:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFOO.I.H.G.S.X.
0.6478.90.91At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.O.I.H.G.S.X.
0.6378.10.91At2g47590819372PHR2 (photolyase/blue-light receptor 2)photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,O.I.H.G.S.X.
0.6378.10.92At3g48730824034GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPVO.I.H.G.S.X.
0.6277.30.92At3g28460822476unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPAO.I.H.G.S.X.
0.6277.30.90At1g56050842056GTP-binding protein-relatedF:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAPO.I.H.G.S.X.
0.6277.30.90At4g39040830059RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.6176.70.91At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.
0.6176.70.91At3g52380824403CP33chloroplast RNA-binding proteinO.I.H.G.S.X.
0.6075.70.94At5g64580836579AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAVO.I.H.G.S.X.
0.6075.70.91At4g24750828577-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOAO.I.H.G.S.X.
0.6075.70.90At3g25660822154glutamyl-tRNA(Gln) amidotransferase, putativeF:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:translation;C:chloroplast, chloroplast stroma;OBFMPAO.I.H.G.S.X.
0.6075.70.91At5g40160834014EMB506 (embryo defective 506)Encodes ankyrin repeat protein EMB506.O.I.H.G.S.X.
0.5974.70.90At1g63610842666unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.5974.70.91At3g18390821368EMB1865 (embryo defective 1865)F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBAO.I.H.G.S.X.
0.5974.70.91At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.5974.70.91At4g29060829027emb2726 (embryo defective 2726)F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVO.I.H.G.S.X.
0.5873.80.92At2g39670818550radical SAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPAVO.I.H.G.S.X.
0.5873.80.91At3g03710821181RIF10 (resistant to inhibition with FSM 10)Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.O.I.H.G.S.X.
0.5873.80.91At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPO.I.H.G.S.X.
0.5773.80.91At3g53130824479LUT1 (LUTEIN DEFICIENT 1)Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. Maps at 67.3 cM on chromosome 3.O.I.H.G.S.X.
0.5773.80.91At5g46580834701pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.5773.80.91At2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAPO.I.H.G.S.X.
0.5673.00.91At3g12930820478-F:unknown;P:biological_process unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.5673.00.90At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPO.I.H.G.S.X.
0.5570.60.91At1g02150839577pentatricopeptide (PPR) repeat-containing proteinF:binding;P:unknown;C:chloroplast;POFMBO.I.H.G.S.X.
0.5570.60.90At2g30695817620-F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOPO.I.H.G.S.X.
0.5570.60.91At3g09210820077PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)F:transcription elongation regulator activity;P:positive regulation of RNA elongation from RNA polymerase II promoter;C:plastid chromosome, nucleoid;BOPFO.I.H.G.S.X.
0.5570.60.91At4g38160829972pde191 (pigment defective 191)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5570.60.92At3g08740820021elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPAO.I.H.G.S.X.
0.5570.60.90At3g18680821399aspartate/glutamate/uridylate kinase family proteinF:uridylate kinase activity, UMP kinase activity;P:amino acid biosynthetic process, 'de novo' pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process;C:chloroplast;BOAPFO.I.H.G.S.X.
0.5469.50.91At1g12800837836S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOMFPAVO.I.H.G.S.X.
0.5368.60.91At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.H.G.S.X.
0.5368.60.91At1g48520841273GATB (GLU-ADT SUBUNIT B)Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).O.I.H.G.S.X.
0.5368.60.92At2g21385816677unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;PO.I.H.G.S.X.
0.5368.60.90At5g22340832294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.H.G.S.X.
0.5166.30.90At2g25830817125YebC-relatedF:unknown;P:unknown;C:chloroplast;BOFMPO.I.H.G.S.X.
0.5166.30.90At5g08280830724HEMC (HYDROXYMETHYLBILANE SYNTHASE)Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.O.I.H.G.S.X.
0.5166.30.91At3g48110823966EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)glycine-tRNA ligaseO.I.H.G.S.X.
0.5166.30.90At1g71720843502S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOPMAFO.I.H.G.S.X.
0.5065.30.90At2g45770819185CPFTSYchloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP integration into isolated thylakoids.O.I.H.G.S.X.
0.5065.30.91At5g14460831297pseudouridine synthase/ transporterF:pseudouridine synthase activity, transporter activity;P:tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.5065.30.90At5g02710831827unknown proteinF:unknown;P:unknown;C:chloroplast;OBPAO.I.H.G.S.X.
0.5065.30.91At5g44650834494unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMOO.I.H.G.S.X.
0.5065.30.92At3g07670819958SET domain-containing proteinF:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:biological_process unknown;C:chloroplast;MFPOO.I.H.G.S.X.
0.4963.50.90At5g58250835937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBPO.I.H.G.S.X.
0.4963.50.90At1g0108083946333 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, nucleus, chloroplast, chloroplast envelope;MPOFBAO.I.H.G.S.X.
0.4963.50.90At1g08540837376SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.O.I.H.G.S.X.
0.4963.50.91At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMO.I.H.G.S.X.
0.4963.50.91At2g31170817673SYCO ARATHF:cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.S.X.
0.4862.50.91At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBO.I.H.G.S.X.
0.4862.50.90At4g17600827479LIL3:1Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.O.I.H.G.S.X.
0.4761.20.90At3g63490825524ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMPO.I.H.G.S.X.
0.4761.20.90At4g36390829791radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAPO.I.H.G.S.X.
0.4761.20.91At3g58140824983phenylalanyl-tRNA synthetase class IIc family proteinF:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAPO.I.H.G.S.X.
0.4659.80.91At4g15110827177CYP97B3member of CYP97BO.I.H.G.S.X.
0.4558.30.92At2g41680818766NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.O.I.H.G.S.X.
0.4558.30.90At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.H.G.S.X.
0.4558.30.91At3g52150824379RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;MPOFBAO.I.H.G.S.X.
0.4558.30.91At4g37510829906ribonuclease III family proteinF:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOFPO.I.H.G.S.X.
0.4457.20.90At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinO.I.H.G.S.X.
0.4457.20.90At5g47190834765ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.4355.30.90At4g02990828116mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.H.G.S.X.
0.4355.30.90At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOO.I.H.G.S.X.
0.4355.30.90At1g50450841467binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast;BOFMPAO.I.H.G.S.X.
0.4355.30.91At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.4355.30.90At4g01690827991PPOXEncodes protoporphyrinogen oxidase (PPOX).O.I.H.G.S.X.
0.4355.30.90At4g18480827580CHLI1Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.O.I.H.G.S.X.
0.4355.30.90At1g32990840194PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11O.I.H.G.S.X.
0.4253.90.90At2g3345081791050S ribosomal protein L28, chloroplast (CL28)F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPFO.I.H.G.S.X.
0.4253.90.90At5g5460083554950S ribosomal protein L24, chloroplast (CL24)F:structural constituent of ribosome;P:translation;C:chloroplast stroma, chloroplast, large ribosomal subunit;BOMPFO.I.H.G.S.X.
0.4152.40.91At1g07320837243RPL4encodes a plastid ribosomal protein L4O.I.H.G.S.X.
0.4152.40.90At5g13510831195ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMFO.I.H.G.S.X.
0.4152.40.91At4g24770828579RBP31 (31-KDA RNA BINDING PROTEIN)Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).O.I.H.G.S.X.
0.4152.40.90At3g1312082050030S ribosomal protein S10, chloroplast, putativeF:structural constituent of ribosome, RNA binding;P:translation;C:small ribosomal subunit, chloroplast;BOMAPFO.I.H.G.S.X.
0.4050.80.90At2g42130818813unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, chloroplast, plastoglobule;POO.I.H.G.S.X.
0.3948.40.91At4g24090828509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMAO.I.H.G.S.X.
0.3948.40.91At5g30510833138RPS1 (RIBOSOMAL PROTEIN S1)F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFAO.I.H.G.S.X.
0.3846.70.90At5g14910831343heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.H.G.S.X.
0.3643.60.91At3g24430822033HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)encodes a MRP-like protein with a nucleotide-binding domain.O.I.H.G.S.X.
0.3643.60.90At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMO.I.H.G.S.X.
0.3541.60.90At2g21280816667SULAA nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.O.I.H.G.S.X.
0.3541.60.90At1g3568084047250S ribosomal protein L21, chloroplast / CL21 (RPL21)F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.3541.60.90At5g62790836400DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.O.I.H.G.S.X.
0.3338.10.90At3g26060822203ATPRX Qencodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatusO.I.H.G.S.X.
0.3235.70.90At1g32550840149ferredoxin family proteinF:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.199.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
50.499.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.999.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.899.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.799.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.499.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.399.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.499.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.499.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.699.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.699.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.299.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.199.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.899.4E-ATMX-35-raw-cel-1574334832
14.699.4E-ATMX-35-raw-cel-1574334816
13.599.4GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
12.599.3E-MEXP-807-raw-cel-1173273252
11.599.3GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.999.2GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.399.2GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.299.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2E-MEXP-807-raw-cel-1173273144
10.199.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.999.1GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.499.1GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.499.1GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.899.0E-ATMX-35-raw-cel-1574334800
8.899.0GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.799.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0825GO:0015995The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.Link to AmiGO
0.0725GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO
0.0543GO:0006779The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.098700970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY
0.082500860Porphyrin and chlorophyll metabolismLink to KEGG PATHWAY
0.043703010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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