Co-expression analysis

Gene ID At5g65685
Gene name soluble glycogen synthase-related
Module size 29 genes
NF 0.15
%ile 11.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g65685836698soluble glycogen synthase-relatedF:starch synthase activity;P:unknown;C:chloroplast;BPOAMO.I.H.G.S.X.
0.2726.20.88At3g60810825252unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.H.G.S.X.
0.2624.40.90At2g46580819270pyridoxine 5'-phosphate oxidase-relatedF:FMN binding, pyridoxamine-phosphate oxidase activity;P:pyridoxine biosynthetic process;C:cellular_component unknown;OBMFPO.I.H.G.S.X.
0.2624.40.88At5g05800830465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.2522.60.90At4g30310829154ribitol kinase, putativeF:carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor;P:carbohydrate metabolic process;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.2420.70.89At1g31410840031putrescine-binding periplasmic protein-relatedF:transporter activity;P:transport;C:chloroplast;BOPAO.I.H.G.S.X.
0.2115.80.90At1g65410842852ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)member of NAP subfamilyO.I.H.G.S.X.
0.2014.40.88At1g752108438585' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast;MPBOO.I.H.G.S.X.
0.1912.70.88At2g33255817888catalytic/ hydrolase/ phosphoglycolate phosphataseF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast;BOAFPMO.I.H.G.S.X.
0.1811.40.90At2g32040817764integral membrane transporter family proteinThe At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.O.I.H.G.S.X.
0.1811.40.90At2g28540817402nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingF:protein binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;OMFPBO.I.H.G.S.X.
0.1710.20.88At5g13950831243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.168.80.89At5g01510831819-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.157.80.88At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.O.I.H.G.S.X.
0.135.80.88At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAO.I.H.G.S.X.
0.114.10.90At1g33290840224sporulation protein-relatedF:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:unknown;BOPMAO.I.H.G.S.X.
0.114.10.90At4g09620826547-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.H.G.S.X.
0.114.10.88At5g61580836279PFK4 (PHOSPHOFRUCTOKINASE 4)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAVO.I.H.G.S.X.
0.114.10.88At5g48630834920cyclin family proteinF:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;MFPOO.I.H.G.S.X.
0.114.10.89At2g35450818110catalytic/ hydrolaseF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPMFO.I.H.G.S.X.
0.103.40.88At3g05520819717F-actin capping protein alpha subunit family proteinF:actin binding;P:actin cytoskeleton organization;C:nucleus, F-actin capping protein complex;MFOPO.I.H.G.S.X.
0.103.40.89At1g50170841439ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesisO.I.H.G.S.X.
0.092.80.88At1g03250838557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.092.80.90At4g32660829401AME3Encodes protein kinase AME3.O.I.H.G.S.X.
0.092.80.88At1g14270837988CAAX amino terminal protease family proteinF:unknown;P:proteolysis;C:membrane;BOPAO.I.H.G.S.X.
0.092.80.88At1g05430837044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.082.30.88At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.O.I.H.G.S.X.
0.061.40.89At1g35340840423ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;BOPFMO.I.H.G.S.X.
0.061.40.88At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
97.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
55.099.8GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
49.499.8GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
48.399.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
47.999.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.999.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.399.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.599.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.899.8GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
37.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
37.099.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.299.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.699.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.499.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.199.6GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
19.199.6E-MEXP-1443-raw-cel-1581869515
17.299.5GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
17.099.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.199.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.399.4E-MEXP-1443-raw-cel-1581869573
12.299.3E-MEXP-1592-raw-cel-1617526984
11.499.3E-MEXP-1592-raw-cel-1617526920
10.699.2GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.699.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.399.2E-MEXP-1592-raw-cel-1617526848
10.199.2E-MEXP-1592-raw-cel-1617526952
9.799.1E-MEXP-1592-raw-cel-1617526976
9.399.1GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0015693The directed movement of magnesium (Mg) ions into, out of, within or between cells.Link to AmiGO
0.0651GO:0019354The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings.Link to AmiGO
0.0611GO:0043572The creation of two or more plastids by division of one plastid. A plastid is any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.032100052Galactose metabolismLink to KEGG PATHWAY
0.027100051Fructose and mannose metabolismLink to KEGG PATHWAY
0.025100030Pentose phosphate pathwayLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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