Co-expression analysis

Gene ID At5g64180
Gene name unknown protein
Module size 6 genes
NF 0.25
%ile 27.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2624.41.00At5g64180836539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.4253.90.81At1g49245841348-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.3133.80.85At3g03120821079ATARFB1C (ADP-ribosylation factor B1C)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.2319.30.81At5g08210830717MIR834aEncodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGUAGCAGUAGCGGUGGUAAO.I.H.G.S.X.
0.2014.40.82At5g62950836415catalytic/ nucleotide bindingF:catalytic activity, nucleotide binding;P:cellular metabolic process;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.092.80.81At1g02880839303TPK1 (THIAMIN PYROPHOSPHOKINASE1)Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.O.I.H.G.S.X.

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Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
186.9100.0E-ATMX-35-raw-cel-1574334800
149.099.9E-ATMX-35-raw-cel-1574334816
130.299.9E-ATMX-35-raw-cel-1574334832
93.599.9E-MEXP-807-raw-cel-1173273144
85.699.9E-MEXP-807-raw-cel-1173273060
84.999.9E-MEXP-807-raw-cel-1173273088
74.699.9E-MEXP-807-raw-cel-1173273223
73.099.9E-MEXP-807-raw-cel-1173273196
71.699.9E-MEXP-807-raw-cel-1173273116
68.899.9E-MEXP-807-raw-cel-1173273252
65.099.8E-MEXP-807-raw-cel-1173273170
19.499.6GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
17.599.5GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
16.999.5GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
14.799.4GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
14.599.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
14.299.4GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
14.099.4E-ATMX-35-raw-cel-1574334880
13.899.4GSM142647MC002_ATH1_A9.1-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
13.099.4GSM142648MC002_ATH1_A9.2-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.399.3GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
11.799.3GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
11.699.3GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
11.399.3E-MEXP-1138-raw-cel-1432772618
10.699.2E-MEXP-1138-raw-cel-1432773066
10.199.2E-MEXP-1138-raw-cel-1432773322
10.199.2GSM142654MC002_ATH1_A11.2-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.099.2E-MEXP-1138-raw-cel-1432772554
10.099.2GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
9.999.1E-MEXP-1138-raw-cel-1432772650
9.899.1E-MEXP-1138-raw-cel-1432772682
9.799.1E-MEXP-1138-raw-cel-1432773290
9.699.1E-MEXP-1138-raw-cel-1432772586
9.699.1GSM142653MC002_ATH1_A11.1-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.599.1GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.399.1GSM142655MC002_ATH1_A11.3-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.399.1GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
9.299.1GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
9.099.1GSM339543Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -5GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
9.099.1E-MEXP-1138-raw-cel-1432773354
9.099.1E-MEXP-1138-raw-cel-1432773258
8.899.0E-MEXP-1138-raw-cel-1432773034
8.899.0E-MEXP-1138-raw-cel-1432773098
8.799.0E-MEXP-1138-raw-cel-1432773130

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0006772The chemical reactions and pathways involving thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.Link to AmiGO
0.0421GO:0044237The chemical reactions and pathways by which individual cells transform chemical substances.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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