Co-expression analysis

Gene ID	At5g61970
Gene name	signal recognition particle-related / SRP-related
Module size	5 genes
NF	0.53
%ile	74.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.	Other DB
0.67	81.6	1.00	At5g61970	836318	signal recognition particle-related / SRP-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.67	81.6	0.95	At5g11980	831071	conserved oligomeric Golgi complex component-related / COG complex component-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.60	75.7	0.95	At3g26370	822241	unknown protein	F:unknown;P:unknown;C:Golgi apparatus;P	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.43	55.3	0.95	At4g24840	828587	-	F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.36	43.6	0.95	At5g65950	836725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
83.7	99.9	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
55.8	99.8	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
47.2	99.8	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
45.0	99.8	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
36.3	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.9	99.7	E-MEXP-739-raw-cel-1099467419
30.7	99.7	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.1	99.7	E-MEXP-1138-raw-cel-1432772586
28.9	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.1	99.7	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
27.8	99.7	E-MEXP-1138-raw-cel-1432772682
27.1	99.7	E-MEXP-739-raw-cel-1099467470
27.1	99.7	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
26.4	99.7	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
26.3	99.7	E-MEXP-1138-raw-cel-1432773130
26.3	99.7	E-MEXP-1138-raw-cel-1432772522
25.7	99.7	E-MEXP-1138-raw-cel-1432773098
25.6	99.7	E-MEXP-1138-raw-cel-1432772554
25.3	99.6	E-MEXP-739-raw-cel-1099467436
24.4	99.6	E-MEXP-739-raw-cel-1099467402
23.1	99.6	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.6	99.6	E-MEXP-739-raw-cel-1099467453
22.4	99.6	E-MEXP-1138-raw-cel-1432772618
22.3	99.6	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.9	99.6	E-MEXP-739-raw-cel-1099467487
21.3	99.6	E-MEXP-1138-raw-cel-1432773066
20.6	99.6	E-MEXP-1138-raw-cel-1432773002
20.4	99.6	E-MEXP-1138-raw-cel-1432772970
20.3	99.6	E-MEXP-1138-raw-cel-1432772714
20.2	99.6	E-MEXP-1138-raw-cel-1432773354
19.9	99.6	E-MEXP-1138-raw-cel-1432773034
19.5	99.6	E-MEXP-1138-raw-cel-1432773162
19.2	99.6	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.6	99.5	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
18.1	99.5	E-MEXP-1138-raw-cel-1432772810
18.0	99.5	E-MEXP-1138-raw-cel-1432772874
18.0	99.5	E-MEXP-1138-raw-cel-1432772842
18.0	99.5	GSM128727	Pieterse_1-13_Mpersicae-48h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
17.1	99.5	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.6	99.5	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
16.6	99.5	E-MEXP-1138-raw-cel-1432772906
16.5	99.5	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
16.5	99.5	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.5	99.5	E-MEXP-1138-raw-cel-1432772650
16.5	99.5	E-MEXP-1138-raw-cel-1432772938
16.2	99.5	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.1	99.5	E-MEXP-1138-raw-cel-1432773226
16.0	99.5	E-MEXP-1138-raw-cel-1432773194
15.3	99.4	E-MEXP-1138-raw-cel-1432773322
15.3	99.4	E-MEXP-1138-raw-cel-1432773258
15.3	99.4	E-MEXP-1138-raw-cel-1432772778
15.3	99.4	GSM128728	Pieterse_1-14_Mpersicae-72h_Rep1_ATH1	GSE5525	Transcriptome changes of Arabidopsis during pathogen and insect attack
14.8	99.4	E-MEXP-285-raw-cel-440782725
14.4	99.4	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.4	99.4	E-ATMX-35-raw-cel-1574334880
14.1	99.4	E-MEXP-1138-raw-cel-1432773290
14.0	99.4	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.9	99.4	E-MEXP-1138-raw-cel-1432772746
13.8	99.4	E-MEXP-285-raw-cel-440782791
13.4	99.4	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.7	99.3	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.5	99.3	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
12.2	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.1	99.3	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.3	99.3	E-MEXP-1138-raw-cel-1432773386
10.7	99.2	E-MEXP-1573-raw-cel-1617523353
10.7	99.2	E-MEXP-1725-raw-cel-1669614603
10.6	99.2	E-MEXP-513-raw-cel-829814462
10.6	99.2	E-ATMX-35-raw-cel-1574334864
10.5	99.2	GSM142667	NE001_ATH1_A5-Evans-m30	GSE6154	Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
10.3	99.2	E-MEXP-509-raw-cel-829148561
10.1	99.2	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.7	99.1	GSM128787	Somerville_1-10_stem-GH7_Rep1_ATH1	GSE5533	Tissue Type Arrays of Columbia-0
9.4	99.1	E-ATMX-35-raw-cel-1574334848
9.4	99.1	E-MEXP-513-raw-cel-829814430
9.4	99.1	GSM176880	AWP_Control_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.3	99.1	E-MEXP-509-raw-cel-829148772
8.9	99.0	E-MEXP-1725-raw-cel-1669614613
8.7	99.0	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.182	1	GO:0007030	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.
0.016	1	GO:0015031	The directed movement of proteins into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.065	1	03060	Protein export

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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