CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g61030

Gene name GR-RBP3 (glycine-rich RNA-binding protein 3)

Module size 5 genes

NF 0.30

%ile 38.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.21 15.8 1.00 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. O.I. H.G. S.X.
0.44 57.2 0.82 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. H.G. S.X.
0.44 57.2 0.78 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 0.75 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. H.G. S.X.
0.26 24.4 0.80 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.21	15.8	1.00	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	O.I.	H.G.	S.X.
0.44	57.2	0.82	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	H.G.	S.X.
0.44	57.2	0.78	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	0.75	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	H.G.	S.X.
0.26	24.4	0.80	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
194.6 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
143.8 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
131.8 99.9 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
125.9 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
58.7 99.8 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
56.0 99.8 E-ATMX-33-raw-cel-1562596174
55.6 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.7 99.8 E-MEXP-828-raw-cel-1156922905
36.6 99.7 GSM142654 MC002_ATH1_A11.2-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.3 99.7 E-MEXP-828-raw-cel-1156922553
34.0 99.7 GSM142725 CH001_ATH1_A004-Hampt-c1a GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
33.9 99.7 E-MEXP-828-raw-cel-1156922368
33.8 99.7 GSM142653 MC002_ATH1_A11.1-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.6 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.8 99.7 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
29.8 99.7 GSM142655 MC002_ATH1_A11.3-dubos-mxh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.6 99.7 GSM142733 CH001_ATH1_A012-Hampt-c1c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
29.0 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.8 99.7 GSM128703 Heinekamp_1-12_cs-root_Rep3_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
28.8 99.7 GSM142732 CH001_ATH1_A011-Hampt-c4c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
28.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.1 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.0 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.0 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5 99.7 E-MEXP-509-raw-cel-829148632
26.2 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.5 99.7 E-MEXP-509-raw-cel-829148772
25.3 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.1 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.1 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.6 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.4 99.6 E-MEXP-828-raw-cel-1156922809
23.3 99.6 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.9 99.6 E-MEXP-509-raw-cel-829148525
22.6 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5 99.6 E-MEXP-509-raw-cel-829148913
21.9 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.9 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.3 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.2 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.3 99.6 E-MEXP-828-raw-cel-1156922296
18.7 99.5 GSM142724 CH001_ATH1_A003-Hampt-c4a_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
18.7 99.5 E-MEXP-828-raw-cel-1156922318
18.4 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.2 99.5 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.1 99.5 GSM131558 ATGE_9_A GSE5631 AtGenExpress: Developmental series (roots)
17.0 99.5 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.9 99.5 E-MEXP-828-raw-cel-1156922708
16.9 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.6 99.5 GSM142723 CH001_ATH1_A002-Hampt-aka GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
16.5 99.5 E-MEXP-828-raw-cel-1156922386
16.5 99.5 GSM131559 ATGE_9_B GSE5631 AtGenExpress: Developmental series (roots)
16.1 99.5 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.5 99.5 GSM128697 Heinekamp_1-6_control-root_Rep2_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
14.6 99.4 GSM131560 ATGE_9_C GSE5631 AtGenExpress: Developmental series (roots)
14.4 99.4 GSM142727 CH001_ATH1_A006-Hampt-akb GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.1 99.4 E-MEXP-828-raw-cel-1156922533
13.8 99.4 GSM142729 CH001_ATH1_A008-Hampt-c1b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.8 99.4 E-MEXP-509-raw-cel-829148808
13.5 99.4 E-MEXP-828-raw-cel-1156922923
12.9 99.3 GSM128701 Heinekamp_1-10_control-root_Rep3_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
12.8 99.3 GSM157328 Hammond_3-12_Caesium-treated-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.8 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.4 99.3 E-MEXP-828-raw-cel-1156922342
12.0 99.3 E-MEXP-828-raw-cel-1156922750
11.9 99.3 E-MEXP-509-raw-cel-829148385
11.6 99.3 E-MEXP-828-raw-cel-1156922467
11.5 99.3 E-MEXP-828-raw-cel-1156922944
11.3 99.3 E-MEXP-828-raw-cel-1156922846
11.0 99.2 GSM184476 Lateral Root Cap root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 E-ATMX-33-raw-cel-1562596241
10.6 99.2 GSM142731 CH001_ATH1_A010-Hampt-akc GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.5 99.2 E-MEXP-828-raw-cel-1156922416
10.4 99.2 E-MEXP-828-raw-cel-1156922829
10.4 99.2 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.3 99.2 E-MEXP-828-raw-cel-1156922572
10.1 99.2 E-MEXP-828-raw-cel-1156922731
10.1 99.2 E-MEXP-828-raw-cel-1156922684
9.9 99.1 E-MEXP-509-raw-cel-829148877
9.8 99.1 GSM133893 Schroeder_1-9_JS46-starve-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
9.5 99.1 E-MEXP-828-raw-cel-1156922613
9.3 99.1 E-MEXP-828-raw-cel-1156922794
9.3 99.1 GSM157314 Hammond_3-4_Control-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
9.2 99.1 GSM157310 Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
9.0 99.1 GSM128695 Heinekamp_1-4_cs-root_Rep1_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
8.8 99.0 E-MEXP-828-raw-cel-1156922438

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
194.6	100.0	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
143.8	99.9	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
131.8	99.9	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
125.9	99.9	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
58.7	99.8	GSM142728	CH001_ATH1_A007-Hampt-c4b	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
56.0	99.8	E-ATMX-33-raw-cel-1562596174
55.6	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
47.7	99.8	E-MEXP-828-raw-cel-1156922905
36.6	99.7	GSM142654	MC002_ATH1_A11.2-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.3	99.7	E-MEXP-828-raw-cel-1156922553
34.0	99.7	GSM142725	CH001_ATH1_A004-Hampt-c1a	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
33.9	99.7	E-MEXP-828-raw-cel-1156922368
33.8	99.7	GSM142653	MC002_ATH1_A11.1-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.6	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.8	99.7	GSM157315	Hammond_3-5_Potassium-starved-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
29.8	99.7	GSM142655	MC002_ATH1_A11.3-dubos-mxh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.6	99.7	GSM142733	CH001_ATH1_A012-Hampt-c1c	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
29.0	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.8	99.7	GSM128703	Heinekamp_1-12_cs-root_Rep3_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
28.8	99.7	GSM142732	CH001_ATH1_A011-Hampt-c4c	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
28.8	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.1	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.0	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.0	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
26.9	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5	99.7	E-MEXP-509-raw-cel-829148632
26.2	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.5	99.7	E-MEXP-509-raw-cel-829148772
25.3	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.1	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.1	99.6	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.8	99.6	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.6	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.4	99.6	E-MEXP-828-raw-cel-1156922809
23.3	99.6	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
22.9	99.6	E-MEXP-509-raw-cel-829148525
22.6	99.6	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5	99.6	E-MEXP-509-raw-cel-829148913
21.9	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.9	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.3	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.2	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.3	99.6	E-MEXP-828-raw-cel-1156922296
18.7	99.5	GSM142724	CH001_ATH1_A003-Hampt-c4a_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
18.7	99.5	E-MEXP-828-raw-cel-1156922318
18.4	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.2	99.5	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.1	99.5	GSM131558	ATGE_9_A	GSE5631	AtGenExpress: Developmental series (roots)
17.0	99.5	GSM176880	AWP_Control_2	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.9	99.5	E-MEXP-828-raw-cel-1156922708
16.9	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.6	99.5	GSM142723	CH001_ATH1_A002-Hampt-aka	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
16.5	99.5	E-MEXP-828-raw-cel-1156922386
16.5	99.5	GSM131559	ATGE_9_B	GSE5631	AtGenExpress: Developmental series (roots)
16.1	99.5	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.5	99.5	GSM128697	Heinekamp_1-6_control-root_Rep2_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
14.6	99.4	GSM131560	ATGE_9_C	GSE5631	AtGenExpress: Developmental series (roots)
14.4	99.4	GSM142727	CH001_ATH1_A006-Hampt-akb	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.1	99.4	E-MEXP-828-raw-cel-1156922533
13.8	99.4	GSM142729	CH001_ATH1_A008-Hampt-c1b	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.8	99.4	E-MEXP-509-raw-cel-829148808
13.5	99.4	E-MEXP-828-raw-cel-1156922923
12.9	99.3	GSM128701	Heinekamp_1-10_control-root_Rep3_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
12.8	99.3	GSM157328	Hammond_3-12_Caesium-treated-root_Rep2_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.8	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.4	99.3	E-MEXP-828-raw-cel-1156922342
12.0	99.3	E-MEXP-828-raw-cel-1156922750
11.9	99.3	E-MEXP-509-raw-cel-829148385
11.6	99.3	E-MEXP-828-raw-cel-1156922467
11.5	99.3	E-MEXP-828-raw-cel-1156922944
11.3	99.3	E-MEXP-828-raw-cel-1156922846
11.0	99.2	GSM184476	Lateral Root Cap root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	E-ATMX-33-raw-cel-1562596241
10.6	99.2	GSM142731	CH001_ATH1_A010-Hampt-akc	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.5	99.2	E-MEXP-828-raw-cel-1156922416
10.4	99.2	E-MEXP-828-raw-cel-1156922829
10.4	99.2	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.3	99.2	E-MEXP-828-raw-cel-1156922572
10.1	99.2	E-MEXP-828-raw-cel-1156922731
10.1	99.2	E-MEXP-828-raw-cel-1156922684
9.9	99.1	E-MEXP-509-raw-cel-829148877
9.8	99.1	GSM133893	Schroeder_1-9_JS46-starve-48h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
9.5	99.1	E-MEXP-828-raw-cel-1156922613
9.3	99.1	E-MEXP-828-raw-cel-1156922794
9.3	99.1	GSM157314	Hammond_3-4_Control-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
9.2	99.1	GSM157310	Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
9.0	99.1	GSM128695	Heinekamp_1-4_cs-root_Rep1_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
8.8	99.0	E-MEXP-828-raw-cel-1156922438

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.024	1	GO:0006396	Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g61030
Gene name	GR-RBP3 (glycine-rich RNA-binding protein 3)
Module size	5 genes
NF	0.30
%ile	38.0

Co-expression analysis

Gene ID At5g61030 Gene name GR-RBP3 (glycine-rich RNA-binding protein 3) Module size 5 genes NF 0.30 %ile 38.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

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Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0241GO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g61030

Gene name GR-RBP3 (glycine-rich RNA-binding protein 3)

Module size 5 genes

NF 0.30

%ile 38.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays