Co-expression analysis

Gene ID At5g60640
Gene name ATPDIL1-4 (PDI-LIKE 1-4)
Module size 5 genes
NF 0.40
%ile 55.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.6781.61.00At5g60640836185ATPDIL1-4 (PDI-LIKE 1-4)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.O.I.H.G.S.X.
0.7586.90.92At5g56360835736calmodulin-binding proteinF:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVAO.I.H.G.S.X.
0.4457.20.93At4g29680829089type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAVO.I.H.G.S.X.
0.1811.40.91At1g71220843462EBS1 (EMS-mutagenized bri1 suppressor 1)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, UDP-glucose:glycoprotein glucosyltransferase activity;P:carbohydrate biosynthetic process, protein amino acid glycosylation;C:endoplasmic reticulum;MFOBPO.I.H.G.S.X.
0.157.80.92At4g02030828155-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
192.3100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
98.899.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
79.899.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.199.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.299.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.399.8GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
41.099.8GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
40.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.899.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.499.7GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
37.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.099.7GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
35.799.7GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
34.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
32.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.599.7GSM75513Col-0 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
29.899.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.799.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.999.7E-MEXP-715-raw-cel-1121836361
25.399.6GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
25.399.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.899.6E-MEXP-715-raw-cel-1121836247
23.899.6E-MEXP-715-raw-cel-1121836334
23.399.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.199.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.799.6E-MEXP-1797-raw-cel-1669768084
22.799.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.599.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.699.5E-MEXP-1797-raw-cel-1669768039
18.199.5E-ATMX-31-raw-cel-1516947899
17.199.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.799.5E-ATMX-31-raw-cel-1516947916
16.599.5GSM179974Arabidopsis roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
16.099.5E-MEXP-715-raw-cel-1121836221
14.599.4E-MEXP-715-raw-cel-1121836113
14.599.4E-ATMX-31-raw-cel-1516947882
14.199.4E-MEXP-1797-raw-cel-1669768003
13.699.4E-MEXP-1797-raw-cel-1669768057
13.699.4E-MEXP-1797-raw-cel-1669768012
13.599.4GSM179973Arabidopsis roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
13.499.4E-MEXP-1797-raw-cel-1669768030
12.799.3GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
12.599.3E-MEXP-1797-raw-cel-1669767949
12.399.3E-MEXP-1797-raw-cel-1669768066
12.299.3GSM25863IAA Treated - 2GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
12.199.3GSM179978Arabidopsis ein2 mutant roots, IAA treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
12.199.3E-MEXP-1797-raw-cel-1669768021
11.999.3GSM179977Arabidopsis ein2 mutant roots, IAA treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlingsLink to GEO
11.799.3E-MEXP-1797-raw-cel-1669767976
11.699.3GSM9587arf19-1_+IAA_2GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
11.299.2E-MEXP-1797-raw-cel-1669767940
11.299.2GSM9618i5i6i19_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
11.199.2GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.099.2GSM25862IAA treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
10.999.2E-MEXP-1797-raw-cel-1669767994
10.699.2GSM9588arf19-1_+IAA_3GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
10.399.2E-MEXP-1797-raw-cel-1669768075
10.299.2GSM9606iaa17-6_+IAA_2GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
10.299.2GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
10.199.2GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.099.2GSM9586arf19-1_+IAA_1GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
9.999.1GSM9619i5i6i19_+IAA_3GSE629Auxin-mediated gene expression in WT, iaa17, axr3 and iaa5iaa6iaa19 mutantsLink to GEO
9.899.1GSM9634arf2-6_+IAA_3GSE630Auxin-mediated gene expressionLink to GEO
9.599.1E-MEXP-1797-raw-cel-1669768048
9.399.1E-MEXP-1797-raw-cel-1669767985
9.199.1GSM9574Col_+IAA_1GSE627Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutantsLink to GEO
9.199.1GSM25877IAA/B Treated - 2GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in ArabidopsisLink to GEO
9.099.1E-MEXP-1797-raw-cel-1669767958

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0046283The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers.Link to AmiGO
0.1671GO:0009117The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).Link to AmiGO
0.1251GO:0010204A series of molecular signals that is activated during defense response and does not depend upon R-genes.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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