CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g57760

Gene name unknown protein

Module size 5 genes

NF 0.37

%ile 50.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.50 65.3 1.00 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.50 65.3 0.77 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 0.68 At4g34770 829629 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. H.G. S.X.
0.33 38.1 0.63 At3g59900 825160 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth. O.I. H.G. S.X.
0.18 11.4 0.64 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. H.G. S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.9 99.7 GSM133302 NO.27 GSE5699 AtGenExpress: ARR21C overexpression
28.2 99.7 GSM133300 NO.25 GSE5699 AtGenExpress: ARR21C overexpression
27.1 99.7 GSM133301 NO.26 GSE5699 AtGenExpress: ARR21C overexpression
22.2 99.6 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
13.9 99.4 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
13.9 99.4 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.7 99.4 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
12.7 99.3 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.6 99.3 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
9.8 99.1 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.7 99.1 E-MEXP-148-raw-cel-350529355
9.1 99.1 GSM128655 Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.9 99.0 GSM131412 AtGen_6-8712_Woundingstress-Shoots-0.25h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
8.9 99.0 GSM133068 2530 GSE5685 AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
8.6 99.0 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0046622 Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism.
0.286 1 GO:0048638 Any process that modulates the frequency, rate or extent of developmental growth.
0.111 1 GO:0042127 Any process that modulates the frequency, rate or extent of cell proliferation.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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