Co-expression analysis

Gene ID At5g57100
Gene name transporter-related
Module size 80 genes
NF 0.20
%ile 17.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g57100835814transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.H.G.S.X.
0.5166.30.84At5g20540832176ATBRXL4 (BREVIS RADIX-LIKE 4)Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.O.I.H.G.S.X.
0.4862.50.83At5g25080832579-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.4862.50.80At3g53540824522unknown proteinF:unknown;P:unknown;C:plasma membrane;OMBFPAVO.I.H.G.S.X.
0.4862.50.80At5g25170832588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFO.I.H.G.S.X.
0.4558.30.82At5g25150832586TAF5 (TBP-ASSOCIATED FACTOR 5)Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).O.I.H.G.S.X.
0.4457.20.85At5g19480832068unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.4457.20.83At2g27100817252SE (SERRATE)Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.O.I.H.G.S.X.
0.4457.20.82At2g03780814905translin family proteinF:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOPO.I.H.G.S.X.
0.4253.90.82At2g01820814713leucine-rich repeat protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:pollen development;C:plasma membrane, plant-type cell wall;MPOBFVAO.I.H.G.S.X.
0.3948.40.83At3g54610824626GCN5Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.O.I.H.G.S.X.
0.3846.70.79At5g24010832466protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.3745.00.80At2g20850816618SRF1 (strubbelig receptor family 1)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.3643.60.80At4g12110826819SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.O.I.H.G.S.X.
0.3541.60.82At5g25800832649exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBVO.I.H.G.S.X.
0.3541.60.82At5g25270832599-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVPO.I.H.G.S.X.
0.3439.80.83At5g46700834713TRN2 (TORNADO 2)Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.O.I.H.G.S.X.
0.3439.80.80At2g03820814908nonsense-mediated mRNA decay NMD3 family proteinF:molecular_function unknown;P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.3032.10.80At1g51580841583KH domain-containing proteinF:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVAO.I.H.G.S.X.
0.2930.30.82At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.2930.30.81At5g17690831635TFL2 (TERMINAL FLOWER 2)Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.O.I.H.G.S.X.
0.2830.30.81At2g44270819035ATP bindingF:ATP binding;P:tRNA processing;C:unknown;BOAMFPO.I.H.G.S.X.
0.2830.30.79At2g07360815305SH3 domain-containing proteinF:binding;P:unknown;C:cytosol, nucleus, plasma membrane, membrane;OPMFBO.I.H.G.S.X.
0.2830.30.79At3g53610824529ATRAB8GTPase AtRAB8 (atrab8)O.I.H.G.S.X.
0.2624.40.80At5g16000831457NIK1 (NSP-INTERACTING KINASE 1)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.2420.70.80At2g238908169215' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBOO.I.H.G.S.X.
0.2420.70.81At1g20100838599unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBVO.I.H.G.S.X.
0.2319.30.80At1g51710841596UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.O.I.H.G.S.X.
0.2319.30.80At1g15420838113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.
0.2319.30.80At1g63420842648-F:unknown;P:biological_process unknown;C:unknown;MPFBOVO.I.H.G.S.X.
0.2217.50.79At3g51670824330SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:plasma membrane;MFPOO.I.H.G.S.X.
0.2115.80.81At1g63780842682IMP4Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.O.I.H.G.S.X.
0.2115.80.82At5g44320834457eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2014.40.80At1g43860840982transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;MOFAPBO.I.H.G.S.X.
0.2014.40.79At2g38730818455peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane, vacuole;BOMFPAVO.I.H.G.S.X.
0.1912.70.79At5g65440836669unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;POO.I.H.G.S.X.
0.1912.70.82At1g36990840609unknown proteinF:unknown;P:unknown;C:chloroplast;OMBFPVO.I.H.G.S.X.
0.1912.70.79At1g54200841860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.H.G.S.X.
0.1912.70.80At2g47330819346DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.1912.70.80At2g44820819091unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.1912.70.79At1g45332841097mitochondrial elongation factor, putativeF:translation factor activity, nucleic acid binding, translation elongation factor activity, ATP binding;P:translational elongation;C:mitochondrion;BOMFPAO.I.H.G.S.X.
0.1912.70.81At5g20590832181unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.1811.40.80At1g51600841585TIFY2Amember of a novel family of plant-specific GATA-type transcription factors.O.I.H.G.S.X.
0.1811.40.79At1g52540841685protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.1811.40.81At3g62220825395serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.1710.20.80At2g45240819132MAP1A (METHIONINE AMINOPEPTIDASE 1A)Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.O.I.H.G.S.X.
0.1710.20.80At1g20410838630unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OAMPFO.I.H.G.S.X.
0.168.80.79At5g15610831413proteasome family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.157.80.80At1g42440840848-F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPVO.I.H.G.S.X.
0.157.80.79At1g50940841516ETFALPHA (electron transfer flavoprotein alpha)Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.O.I.H.G.S.X.
0.146.80.79At3g17590821025BSH (BUSHY GROWTH)Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.O.I.H.G.S.X.
0.146.80.79At1g51590841584mannosyl-oligosaccharide 1,2-alpha-mannosidase, putativeF:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, calcium ion binding;P:unknown;C:Golgi apparatus;MFOPBO.I.H.G.S.X.
0.146.80.79At2g16460816144metal ion bindingF:metal ion binding;P:biological_process unknown;C:mitochondrion, plasma membrane;MFPOBO.I.H.G.S.X.
0.146.80.82At4g14350827078protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane, phragmoplast, cytoplasm;MOPFBVAO.I.H.G.S.X.
0.135.80.81At1g15280838095glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;OMFPBVO.I.H.G.S.X.
0.135.80.81At5g20200832143nucleoporin-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPO.I.H.G.S.X.
0.135.80.82At5g13970831245unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAO.I.H.G.S.X.
0.135.80.79At2g16640816165TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)F:transmembrane receptor activity;P:protein targeting to chloroplast;C:chloroplast outer membrane, membrane;OMFBPVAO.I.H.G.S.X.
0.135.80.80At4g16120827298COBL7 (COBRA-LIKE 7)putative membrane-anchored cell wall proteinO.I.H.G.S.X.
0.124.90.79At4g00740828020dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOAO.I.H.G.S.X.
0.124.90.79At3g17740821042unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.114.10.81At5g17020831565XPO1AEncodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.O.I.H.G.S.X.
0.114.10.79At5g38830833874tRNA synthetase class I (C) family proteinF:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, cysteinyl-tRNA aminoacylation;C:cytoplasm;OBMFAPVO.I.H.G.S.X.
0.114.10.80At2g03670814895CDC48BCDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog BO.I.H.G.S.X.
0.103.40.80At5g20570832179RBX1 (RING-BOX 1)Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.O.I.H.G.S.X.
0.103.40.79At5g16070831464chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.103.40.79At3g45740823716hydrolase family protein / HAD-superfamily proteinF:hydrolase activity;P:metabolic process;C:mitochondrion;FMOPABO.I.H.G.S.X.
0.092.80.79At1g66750842993CAK4 (CDK-ACTIVATING KINASE 4)F:protein binding, protein serine/threonine kinase activity, kinase activity;P:regulation of cyclin-dependent protein kinase activity;C:nucleus, cytoplasm;MPOFBVAO.I.H.G.S.X.
0.092.80.80At1g50500841472HIT1 (HEAT-INTOLERANT 1)encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.O.I.H.G.S.X.
0.082.30.80At1g65650842876UCH2F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular, cytoplasm;MFOPO.I.H.G.S.X.
0.082.30.81At2g27110817253FRS3 (FAR1-related sequence 3)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFMO.I.H.G.S.X.
0.082.30.80At3g47630823917-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.H.G.S.X.
0.082.30.80At2g27090817251unknown proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOVBO.I.H.G.S.X.
0.071.90.80At2g01970814728endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFO.I.H.G.S.X.
0.071.90.79At2g20300816549ALE2 (Abnormal Leaf Shape 2)Encodes ABNORMAL LEAF SHAPE 2 (ALE2), a receptor-like protein kinase (RLK) with a cluster of basic amino acid residues followed by a cysteine-containing sequence in the putative extracellular domain. Function together with ACR4 (Arabidopsis homolog of the Crinkly4) and ALE1 in positively regulating protoderm-specific gene expression and for the formation of leafy organs. ale2 mutants have various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs.O.I.H.G.S.X.
0.071.90.80At4g38900830045bZIP proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPBFAO.I.H.G.S.X.
0.061.40.79At2g45200819128GOS12 (GOLGI SNARE 12)Encodes a member of the GOS1 (Golgi SNARE) gene family.O.I.H.G.S.X.
0.061.40.80At5g64220836543calmodulin-binding proteinF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.051.10.80At3g16740820926F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.051.10.79At1g15370838106-F:molecular_function unknown;P:transport;C:unknown;POFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
69.799.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
68.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
65.199.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
65.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
64.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
63.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
62.099.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
61.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
61.299.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
60.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
59.699.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.899.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.199.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.699.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.099.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.999.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.599.7GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
30.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.599.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
28.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.199.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.399.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.499.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.999.4GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
14.399.4GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
11.799.3GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
11.299.2GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.599.2GSM31920735S-MIF1 line#127, dark grownGSE12729Microarray analysis of MINI ZINC FINGER 1 (MIF1) overexpression transgenic Arabidopsis seedlingsLink to GEO
9.999.1GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.799.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.399.1GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.099.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0482GO:0016579The removal of one or more ubiquitin moieties from a protein.Link to AmiGO
0.0472GO:0010015The process by which the anatomical structures of roots are generated and organized. Morphogenesis pertains to the creation of form. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support.Link to AmiGO
0.0452GO:0010016The process by which the anatomical structures of the shoot are generated and organized. Morphogenesis pertains to the creation of form. The shoot is the part of a seed plant body that is usually above ground.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.031203420Nucleotide excision repairLink to KEGG PATHWAY
0.018103022Basal transcription factorsLink to KEGG PATHWAY
0.016100970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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