Co-expression analysis

Gene ID At5g56950
Gene name NAP1
Module size 78 genes
NF 0.23
%ile 23.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g56950835797NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.O.I.H.G.S.X.
0.4152.40.88At1g31817840071NFD3 (NUCLEAR FUSION DEFECTIVE 3)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOPMAFO.I.H.G.S.X.
0.4050.80.87At5g26360832705chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.4050.80.87At2g20280816547zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.H.G.S.X.
0.3948.40.86At2g40290818621eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeF:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPVO.I.H.G.S.X.
0.3948.40.86At3g56150824781EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)member of eIF3c - eukaryotic initiation factor 3cO.I.H.G.S.X.
0.3846.70.86At1g14710838036hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVBAO.I.H.G.S.X.
0.3846.70.86At2g2014081653326S protease regulatory complex subunit 4, putativeF:hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:plasma membrane;OBMFPAVO.I.H.G.S.X.
0.3643.60.86At1g79650844304RAD23putative DNA repair protein RAD23O.I.H.G.S.X.
0.3439.80.87At3g03960819549chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:membrane;BOMFAPO.I.H.G.S.X.
0.3439.80.86At2g36070818180ATTIM44-2One of two genes in Arabidopsis that encode a putative subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is thought to provide the energy for translocation via hydrolysis of ATP.O.I.H.G.S.X.
0.3338.10.86At1g19525--O.I.H.G.S.X.
0.3235.70.86At5g43720834392unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVAO.I.H.G.S.X.
0.3235.70.86At5g05470830430EIF2 ALPHAprotein synthesis initiation factor eIF2 alphaO.I.H.G.S.X.
0.3133.80.87At4g26110828717NAP1Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.O.I.H.G.S.X.
0.3133.80.87At3g06930819878protein arginine N-methyltransferase family proteinEncodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.H.G.S.X.
0.3133.80.86At5g43960834419nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBVAO.I.H.G.S.X.
0.3133.80.86At5g53070835387ribosomal protein L9 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.H.G.S.X.
0.3032.10.86At3g06040819777ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.2930.30.86At3g52140824378tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:plasma membrane, chloroplast;MBFOPAVO.I.H.G.S.X.
0.2930.30.86At4g32400829375SHS1 (SODIUM HYPERSENSITIVE 1)Encodes a plastidial nucleotide uniport carrier protein required to export newly synthesized adenylates into the cytosol.O.I.H.G.S.X.
0.2830.30.85At4g25210828624transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:nucleolus, chloroplast;OMFBPVAO.I.H.G.S.X.
0.2830.30.85At3g09890820147ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2726.20.87At2g31660817722SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. Loss of function mutations in SAD2 exhibit increased tolerance for UV stress, increased production of UV protective secondary metabolites and suppression of nuclear localization of MYB4 (a repressor of UV stress response genes).O.I.H.G.S.X.
0.2726.20.86At5g14040831252mitochondrial phosphate transporterF:binding;P:transport;C:in 7 components;MFPOVO.I.H.G.S.X.
0.2726.20.86At1g14060837966-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.2726.20.86At2g34970818061eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity;P:biosynthetic process, regulation of translational initiation;C:unknown;BOMAFPO.I.H.G.S.X.
0.2624.40.86At1g18070838387EF-1-alpha-related GTP-binding protein, putativeF:translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity;P:translational termination;C:vacuole;BMOFPAO.I.H.G.S.X.
0.2624.40.86At4g31460829273ribosomal protein L28 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OBFMPO.I.H.G.S.X.
0.2624.40.87At5g60980836219nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;BMPOFVAO.I.H.G.S.X.
0.2624.40.85At1g03860839228ATPHB2 (PROHIBITIN 2)prohibitin 2O.I.H.G.S.X.
0.2624.40.86At3g18165821343MOS4 (Modifier of snc1,4)Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity.O.I.H.G.S.X.
0.2624.40.86At1g06900837200catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:cellular_component unknown;MOBFPVAO.I.H.G.S.X.
0.2624.40.87At5g3974083397060S ribosomal protein L5 (RPL5B)F:structural constituent of ribosome, 5S rRNA binding;P:translation, ribosome biogenesis;C:in 6 components;MAOFPBO.I.H.G.S.X.
0.2624.40.87At3g62120825385tRNA synthetase class II (G, H, P and S) family proteinF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:membrane;BOMAFPO.I.H.G.S.X.
0.2522.60.87At1g30580839938GTP bindingF:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAPO.I.H.G.S.X.
0.2420.70.86At1g23280838937MAK16 protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2420.70.86At2g1736081624340S ribosomal protein S4 (RPS4A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, plasma membrane, chloroplast;MOAFPO.I.H.G.S.X.
0.2420.70.88At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.2319.30.86At4g18040827529EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.O.I.H.G.S.X.
0.2319.30.86At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPO.I.H.G.S.X.
0.2319.30.86At5g22650832328HD2B (HISTONE DEACETYLASE 2B)Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.O.I.H.G.S.X.
0.2217.50.85At1g34130840312STT3B (staurosporin and temperature sensitive 3-like b)Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.O.I.H.G.S.X.
0.2217.50.86At3g0963082012060S ribosomal protein L4/L1 (RPL4A)F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPBO.I.H.G.S.X.
0.2217.50.86At1g73180843652eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPBO.I.H.G.S.X.
0.2217.50.86At5g07350830626tudor domain-containing protein / nuclease family proteinF:hydrolase activity, acting on ester bonds, protein binding, nuclease activity, nucleic acid binding;P:response to cadmium ion;C:cell wall, plasma membrane, chloroplast;MOFPBAO.I.H.G.S.X.
0.2217.50.86At1g49760841399PAB8 (POLY(A) BINDING PROTEIN 8)polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.O.I.H.G.S.X.
0.2217.50.85At4g22320828327unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVAO.I.H.G.S.X.
0.2115.80.87At1g70190843355ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.2115.80.85At5g05780830463RPN8A (RP NON-ATPASE SUBUNIT 8A)Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.O.I.H.G.S.X.
0.2115.80.87At4g39690830124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVAO.I.H.G.S.X.
0.2014.40.86At5g49210834980unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.H.G.S.X.
0.2014.40.85At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.2014.40.86At5g13850831231NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)F:molecular_function unknown;P:response to salt stress;C:cytosolic ribosome;MFOPVO.I.H.G.S.X.
0.1912.70.86At1g47260841129GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.1912.70.86At3g59760825145OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasCO.I.H.G.S.X.
0.1912.70.85At5g27990832869unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.1912.70.86At5g28740832986transcription-coupled DNA repair protein-relatedF:binding;P:RNA processing;C:intracellular;MFOPBAO.I.H.G.S.X.
0.1912.70.85At1g14610838023TWN2 (TWIN 2)Required for proper proliferation of basal cells.O.I.H.G.S.X.
0.1912.70.85At5g08420830741RNA bindingF:RNA binding;P:biological_process unknown;C:cellular_component unknown;OMFAPBO.I.H.G.S.X.
0.1811.40.86At3g20050821544ATTCP-1Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).O.I.H.G.S.X.
0.1811.40.86At3g01280820914VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.S.X.
0.1811.40.86At2g4412081901860S ribosomal protein L7 (RPL7C)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFPO.I.H.G.S.X.
0.1710.20.87At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.
0.1710.20.86At1g51980841627mitochondrial processing peptidase alpha subunit, putativeF:metalloendopeptidase activity, ATP binding;P:proteolysis, response to salt stress;C:in 6 components;BOMFPAVO.I.H.G.S.X.
0.1710.20.85At5g63400836459ADK1 (ADENYLATE KINASE 1)encodes a protein similar to adenylate kinase.O.I.H.G.S.X.
0.168.80.88At1g07140837225SIRANBPEncodes a putative Ran-binding protein (siRanBP).O.I.H.G.S.X.
0.168.80.85At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFO.I.H.G.S.X.
0.157.80.86At5g67500836886VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.S.X.
0.157.80.86At5g39990833996glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOO.I.H.G.S.X.
0.146.80.85At1g52380841668Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing proteinF:molecular_function unknown;P:intracellular transport;C:cytosol, nucleus;MFOPBVO.I.H.G.S.X.
0.135.80.85At1g22450838851COX6B (CYTOCHROME C OXIDASE 6B)subunit 6b of cytochrome c oxidaseO.I.H.G.S.X.
0.135.80.85At4g26720828779PPX1 (PROTEIN PHOSPHATASE X 1)Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots.O.I.H.G.S.X.
0.135.80.85At5g63150836436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.124.90.85At5g36230833620eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOVO.I.H.G.S.X.
0.124.90.86At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.
0.114.10.87At3g52300824395ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)F:hydrogen ion transmembrane transporter activity;P:response to salt stress;C:in 8 components;MPFOO.I.H.G.S.X.
0.061.40.85At4g33650829506DRP3A (DYNAMIN-RELATED PROTEIN 3A)Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
41.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.399.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.299.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.099.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.199.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.799.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.299.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.799.6GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
20.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.999.5GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
15.899.5GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
14.199.4GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
13.799.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.999.3GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
12.599.3GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.999.3GSM184561Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.799.3GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.699.2GSM184560Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.399.2GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.399.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.599.1GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.199.1GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
9.099.1GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0673GO:0044267The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes protein modification.Link to AmiGO
0.0613GO:0006913The directed movement of molecules between the nucleus and the cytoplasm.Link to AmiGO
0.0483GO:0009965The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.032200970Aminoacyl-tRNA biosynthesisLink to KEGG PATHWAY
0.029203050ProteasomeLink to KEGG PATHWAY
0.027300190Oxidative phosphorylationLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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