Co-expression analysis

Gene ID At5g56270
Gene name WRKY2
Module size 20 genes
NF 0.38
%ile 52.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5570.61.00At5g56270835726WRKY2WRKY transcription factor 2O.I.H.G.S.X.
0.6579.60.81At1g30810839963transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.H.G.S.X.
0.6378.10.84At5g47520834802AtRABA5a (Arabidopsis Rab GTPase homolog A5a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.6075.70.82At3g27540822376glycosyl transferase family 17 proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFVO.I.H.G.S.X.
0.5166.30.80At5g24870832556zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;OMPFBVAO.I.H.G.S.X.
0.5065.30.81At5g46250834667RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPFOO.I.H.G.S.X.
0.4659.80.83At4g33140829451unknown proteinF:unknown;P:unknown;C:unknown;OBPFVO.I.H.G.S.X.
0.4558.30.79At2g41630818761TFIIB (TRANSCRIPTION FACTOR II B)Encodes the transcription factor TFIIB.O.I.H.G.S.X.
0.4050.80.84At3g24740822072-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.79At5g01450831860protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVFO.I.H.G.S.X.
0.3948.40.80At2g17370816244HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds.O.I.H.G.S.X.
0.3745.00.81At2g28320817379pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:plasma membrane;PMOO.I.H.G.S.X.
0.3745.00.83At5g58720835986PRLI-interacting factor, putativeF:damaged DNA binding, ATP binding;P:mismatch repair;C:cellular_component unknown;FPMOBO.I.H.G.S.X.
0.3643.60.78At3g20040821543ATHXK4F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:glucose catabolic process to butanediol, glucose catabolic process to lactate and acetate, glycolysis, anaerobic glycolysis, glucose catabolic process to D-lactate and ethanol;C:mitochondrion;MFPOBO.I.H.G.S.X.
0.3541.60.87At1g05790837088lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;MPOFBO.I.H.G.S.X.
0.3338.10.84At1g29750839853RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1)Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.O.I.H.G.S.X.
0.2522.60.78At3g20770821625EIN3 (ETHYLENE-INSENSITIVE3)ethylene-insensitive3O.I.H.G.S.X.
0.2420.70.82At1g47380841141protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.H.G.S.X.
0.2420.70.80At2g30350817585endo/excinuclease amino terminal domain-containing proteinF:nuclease activity;P:DNA repair;C:intracellular;MOFPBVO.I.H.G.S.X.
0.2014.40.78At3g06190819793BPM2 (BTB-POZ AND MATH DOMAIN 2)F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.199.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
54.499.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.699.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
45.199.8GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
43.899.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.299.8GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.899.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.699.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.899.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.399.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.699.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.299.7GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
28.799.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.699.7E-MEXP-1797-raw-cel-1669768039
27.099.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.399.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.399.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.699.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.499.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.499.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.399.6GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.399.6E-MEXP-1797-raw-cel-1669767940
22.299.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.099.6E-MEXP-1797-raw-cel-1669768084
21.999.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.499.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.999.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.299.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.999.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.999.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.899.5GSM270865Arabidopsis cell culture, 4 h_control_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
16.799.5GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
16.699.5E-MEXP-1797-raw-cel-1669768030
15.299.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.499.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.399.4GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.099.4GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
13.999.4GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
13.799.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.399.4E-MEXP-1797-raw-cel-1669768066
12.899.3E-ATMX-35-raw-cel-1574334832
12.399.3E-MEXP-1797-raw-cel-1669767967
12.199.3GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.999.3E-MEXP-1797-raw-cel-1669768012
11.999.3GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.899.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.799.3E-ATMX-31-raw-cel-1516947916
11.699.3GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.599.3GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
11.399.3GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
11.199.2E-MEXP-1797-raw-cel-1669768003
10.999.2E-ATMX-31-raw-cel-1516947882
10.699.2E-MEXP-1797-raw-cel-1669767985
10.599.2E-MEXP-1797-raw-cel-1669767994
10.499.2E-ATMX-31-raw-cel-1516947899
10.499.2GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
10.199.2E-ATMX-35-raw-cel-1574334816
9.999.1GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
9.899.1GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.899.1E-MEXP-1797-raw-cel-1669767949
9.599.1GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.499.1GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.199.1E-MEXP-1797-raw-cel-1669768057
8.899.0E-MEXP-1797-raw-cel-1669767958
8.799.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0E-MEXP-1797-raw-cel-1669767976

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0016104The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units.Link to AmiGO
0.0591GO:0006487The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.Link to AmiGO
0.0571GO:0006298A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.038103022Basal transcription factorsLink to KEGG PATHWAY
0.033100900Terpenoid backbone biosynthesisLink to KEGG PATHWAY
0.011101066Biosynthesis of alkaloids derived from terpenoid and polyketideLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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