Co-expression analysis

Gene ID At5g55290
Gene name ATP synthase subunit H family protein
Module size 24 genes
NF 0.34
%ile 45.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8994.61.00At5g55290835622ATP synthase subunit H family proteinF:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOFO.I.H.G.S.X.
0.4862.50.92At5g48810834939CB5-D (CYTOCHROME B5 ISOFORM D)Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.O.I.H.G.S.X.
0.4659.80.92At4g02620828221vacuolar ATPase subunit F family proteinF:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPAO.I.H.G.S.X.
0.4253.90.92At2g03680814896SPR1 (SPIRAL1)The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.O.I.H.G.S.X.
0.4050.80.92At1g01230839331ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.4050.80.91At5g64400836561-F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.3948.40.92At3g08610820008unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PO.I.H.G.S.X.
0.3846.70.92At2g33470817912GLTP1 (glycolipid transfer protein 1)F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:plasma membrane;MFPOO.I.H.G.S.X.
0.3745.00.91At2g20930816627-F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOPO.I.H.G.S.X.
0.3643.60.91At5g59880836110ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)Encodes actin depolymerizing factor 3 (ADF3).O.I.H.G.S.X.
0.3541.60.91At3g03070821133NADH-ubiquinone oxidoreductase-relatedF:unknown;P:unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.3541.60.92At2g47170819330ARF1A1CGene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.3541.60.90At2g47380819351cytochrome c oxidase subunit Vc family protein / COX5C family proteinF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;PO.I.H.G.S.X.
0.3439.80.91At2g28430817391unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.70.92At4g37830829939cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPOO.I.H.G.S.X.
0.3133.80.91At4g38920830047ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPAO.I.H.G.S.X.
0.3032.10.92At4g26710828778ATP synthase subunit H family proteinF:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOFO.I.H.G.S.X.
0.2830.30.91At1g14400838002UBC1 (UBIQUITIN CARRIER PROTEIN 1)ubiquitin carrier proteinO.I.H.G.S.X.
0.2830.30.91At1g49140841337NADH-ubiquinone oxidoreductase-relatedF:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPMO.I.H.G.S.X.
0.2726.20.92At3g51040824268RTH (RTE1-HOMOLOG)Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.O.I.H.G.S.X.
0.2726.20.91At4g32470829382ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFOO.I.H.G.S.X.
0.2319.30.91At1g35160840403GF14 PHI (GF14 PROTEIN PHI CHAIN)GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.2014.40.90At1g69960843333PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)type 2A serine/threonine protein phosphatase (PP2A) mRNA,O.I.H.G.S.X.
0.1811.40.91At5g51400835214unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
79.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
62.499.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
36.899.7GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
34.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.299.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.299.7GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.199.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.099.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.699.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.699.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.499.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.899.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.399.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.699.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.999.6E-MEXP-1451-raw-cel-1585200202
20.699.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.599.6E-MEXP-1451-raw-cel-1585200266
18.099.5E-MEXP-1451-raw-cel-1585200234
16.899.5E-MEXP-1451-raw-cel-1585200170
14.799.4GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.799.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.299.3E-MEXP-265-raw-cel-414618491
11.499.3E-NASC-76-raw-cel-1359878900
11.099.2E-MEXP-265-raw-cel-414618796
10.799.2GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.399.1GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.399.1GSM131655ATGE_27_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.199.1E-MEXP-265-raw-cel-414618291
9.099.1E-MEXP-265-raw-cel-414618394
8.999.0E-NASC-76-raw-cel-1359878976

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1482GO:0015991The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.Link to AmiGO
0.0741GO:0051211The process by which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell.Link to AmiGO
0.0711GO:0033523The modification of histone H2B by addition of ubiquitin groups.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.084700190Oxidative phosphorylationLink to KEGG PATHWAY
0.016104120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.011701100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage