CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g52680

Gene name heavy-metal-associated domain-containing protein

Module size 5 genes

NF 0.79

%ile 94.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.89 94.6 1.00 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV O.I. H.G. S.X.
0.89 94.6 0.77 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. H.G. S.X.
0.80 89.8 0.87 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. H.G. S.X.
0.80 89.8 0.77 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA O.I. H.G. S.X.
0.40 50.8 0.73 At3g13090 820497 ATMRP8 member of MRP subfamily O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.89	94.6	1.00	At5g52680	835345	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV	O.I.	H.G.	S.X.
0.89	94.6	0.77	At5g52690	835346	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.80	89.8	0.87	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.80	89.8	0.77	At5g52710	835348	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA	O.I.	H.G.	S.X.
0.40	50.8	0.73	At3g13090	820497	ATMRP8	member of MRP subfamily	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
79.8 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.6 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
67.8 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.9 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.1 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.9 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.8 99.8 E-MEXP-509-raw-cel-829148348
41.3 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.1 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.1 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.0 99.7 E-MEXP-509-raw-cel-829148129
28.8 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.4 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.6 99.7 E-MEXP-509-raw-cel-829148420
25.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.9 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.9 99.6 E-MEXP-509-raw-cel-829148456
21.9 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.5 99.6 E-MEXP-509-raw-cel-829148525
19.6 99.6 E-MEXP-509-raw-cel-829148385
17.0 99.5 E-MEXP-509-raw-cel-829148201
16.3 99.5 E-MEXP-509-raw-cel-829148561
15.9 99.5 E-MEXP-509-raw-cel-829148666
15.9 99.5 E-MEXP-509-raw-cel-829148165
15.6 99.5 E-MEXP-509-raw-cel-829148276
15.5 99.5 E-MEXP-509-raw-cel-829148703
14.9 99.4 E-MEXP-509-raw-cel-829148597
14.6 99.4 E-MEXP-1592-raw-cel-1617526888
14.3 99.4 E-MEXP-509-raw-cel-829148632
14.3 99.4 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.0 99.4 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.6 99.3 E-MEXP-509-raw-cel-829148772
12.3 99.3 E-MEXP-509-raw-cel-829148090
12.0 99.3 E-MEXP-509-raw-cel-829148492
12.0 99.3 E-MEXP-509-raw-cel-829148913
11.5 99.3 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3 99.3 E-MEXP-509-raw-cel-829148842
10.9 99.2 E-MEXP-509-raw-cel-829148313
10.5 99.2 E-MEXP-509-raw-cel-829148877
10.4 99.2 E-MEXP-1592-raw-cel-1617526920
10.3 99.2 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
10.1 99.2 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.9 99.1 E-MEXP-509-raw-cel-829148240
9.6 99.1 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.5 99.1 E-MEXP-509-raw-cel-829148738
9.2 99.1 E-MEXP-1592-raw-cel-1617526984
8.8 99.0 E-MEXP-509-raw-cel-829148808

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
79.8	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
74.6	99.9	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
67.8	99.9	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.9	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.0	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.1	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.4	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.9	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
41.8	99.8	E-MEXP-509-raw-cel-829148348
41.3	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.1	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.1	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.0	99.7	E-MEXP-509-raw-cel-829148129
28.8	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.4	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.6	99.7	E-MEXP-509-raw-cel-829148420
25.5	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.9	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.9	99.6	E-MEXP-509-raw-cel-829148456
21.9	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.5	99.6	E-MEXP-509-raw-cel-829148525
19.6	99.6	E-MEXP-509-raw-cel-829148385
17.0	99.5	E-MEXP-509-raw-cel-829148201
16.3	99.5	E-MEXP-509-raw-cel-829148561
15.9	99.5	E-MEXP-509-raw-cel-829148666
15.9	99.5	E-MEXP-509-raw-cel-829148165
15.6	99.5	E-MEXP-509-raw-cel-829148276
15.5	99.5	E-MEXP-509-raw-cel-829148703
14.9	99.4	E-MEXP-509-raw-cel-829148597
14.6	99.4	E-MEXP-1592-raw-cel-1617526888
14.3	99.4	E-MEXP-509-raw-cel-829148632
14.3	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.0	99.4	GSM131578	ATGE_31_C2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.6	99.3	E-MEXP-509-raw-cel-829148772
12.3	99.3	E-MEXP-509-raw-cel-829148090
12.0	99.3	E-MEXP-509-raw-cel-829148492
12.0	99.3	E-MEXP-509-raw-cel-829148913
11.5	99.3	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.3	99.3	E-MEXP-509-raw-cel-829148842
10.9	99.2	E-MEXP-509-raw-cel-829148313
10.5	99.2	E-MEXP-509-raw-cel-829148877
10.4	99.2	E-MEXP-1592-raw-cel-1617526920
10.3	99.2	GSM216981	Vector_shoots_4h_GA4+DEX_repl2	GSE8741	DELLA protein direct targets in Arabidopsis
10.1	99.2	GSM131576	ATGE_31_A2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.9	99.1	E-MEXP-509-raw-cel-829148240
9.6	99.1	GSM131577	ATGE_31_B2	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.5	99.1	E-MEXP-509-raw-cel-829148738
9.2	99.1	E-MEXP-1592-raw-cel-1617526984
8.8	99.0	E-MEXP-509-raw-cel-829148808

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.082 4 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.082	4	GO:0030001	The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At5g52680
Gene name	heavy-metal-associated domain-containing protein
Module size	5 genes
NF	0.79
%ile	94.0

Co-expression analysis

Gene ID At5g52680 Gene name heavy-metal-associated domain-containing protein Module size 5 genes NF 0.79 %ile 94.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0824GO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g52680

Gene name heavy-metal-associated domain-containing protein

Module size 5 genes

NF 0.79

%ile 94.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.082 4 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays