Co-expression analysis

Gene ID At5g51950
Gene name glucose-methanol-choline (GMC) oxidoreductase family protein
Module size 27 genes
NF 0.70
%ile 88.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g51950835270glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVAO.I.H.G.S.X.
0.9296.00.82At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.H.G.S.X.
0.9296.00.77At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.H.G.S.X.
0.8994.60.75At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.H.G.S.X.
0.8592.40.70At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.O.I.H.G.S.X.
0.8491.90.72At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.H.G.S.X.
0.7989.10.80At1g24540839069CYP86C1member of CYP86CO.I.H.G.S.X.
0.7788.00.72At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMO.I.H.G.S.X.
0.7687.40.68At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.H.G.S.X.
0.7687.40.73At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.H.G.S.X.
0.7687.40.72At1g11590837702pectin methylesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMO.I.H.G.S.X.
0.7486.10.74At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.7385.50.74At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.7385.50.73At2g46960819310CYP709B1member of CYP709BO.I.H.G.S.X.
0.6781.60.67At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.H.G.S.X.
0.6680.10.67At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.H.G.S.X.
0.6478.90.65At3g60900825261FLA10F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVAO.I.H.G.S.X.
0.6378.10.65At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.O.I.H.G.S.X.
0.6378.10.73At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.H.G.S.X.
0.6277.30.72At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.H.G.S.X.
0.6277.30.65At4g09820826571TT8 (TRANSPARENT TESTA 8)TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.O.I.H.G.S.X.
0.6176.70.66At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.H.G.S.X.
0.5974.70.71At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.H.G.S.X.
0.5773.80.69At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.5570.60.70At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processO.I.H.G.S.X.
0.4457.20.69At2g21430816682cysteine proteinase A494, putative / thiol protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.H.G.S.X.
0.3235.70.69At5g66330836765leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
91.599.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
85.799.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
81.699.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
81.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
78.399.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
77.199.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
73.399.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
72.399.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
71.999.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
69.599.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
68.099.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
66.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
62.899.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
61.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
59.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
58.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
58.899.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
58.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
57.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.799.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.599.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.299.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.499.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.699.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
19.199.6GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
17.799.5E-MEXP-1344-raw-cel-1559561563
15.799.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
15.799.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.399.3E-MEXP-1345-raw-cel-1559561199
10.899.2E-MEXP-1344-raw-cel-1559561593
10.899.2E-MEXP-1345-raw-cel-1559561139
10.799.2GSM184911Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.099.2GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.099.2GSM133968Birnbaum_1-19_LRC-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
8.899.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.899.0GSM184910Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.799.0GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0711GO:0007035Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion.Link to AmiGO
0.0711GO:0009964Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids.Link to AmiGO
0.0651GO:0006624The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.068200040Pentose and glucuronate interconversionsLink to KEGG PATHWAY
0.047100941Flavonoid biosynthesisLink to KEGG PATHWAY
0.036200500Starch and sucrose metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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