Co-expression analysis

Gene ID At5g50380
Gene name ATEXO70F1 (exocyst subunit EXO70 family protein F1)
Module size 46 genes
NF 0.25
%ile 27.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9195.61.00At5g50380835106ATEXO70F1 (exocyst subunit EXO70 family protein F1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X.
0.5065.30.91At1g24560839070unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.4963.50.91At4g11860826793-F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPBO.I.H.G.S.X.
0.4355.30.92At1g32130840105-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.4253.90.91At5g43560834376meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.4152.40.90At1g75850843918VPS35B (VPS35 HOMOLOG B)F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.4152.40.91At3g20290821573ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).O.I.H.G.S.X.
0.3846.70.90At5g50230835088nucleotide bindingF:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.3745.00.91At3g61710825344autophagy protein Apg6 familyF:molecular_function unknown;P:autophagy;C:unknown;MOFBPVAO.I.H.G.S.X.
0.3541.60.90At3g49490824111unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;OMFBPO.I.H.G.S.X.
0.3032.10.90At4g24740828576AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.O.I.H.G.S.X.
0.3032.10.89At5g19000832018ATBPM1 (BTB-POZ and MATH domain 1)F:protein binding;P:biological_process unknown;C:unknown;MPOFO.I.H.G.S.X.
0.3032.10.91At5g43130834330TAF4 (TBP-ASSOCIATED FACTOR 4)F:transcription initiation factor activity;P:transcription initiation;C:transcription factor TFIID complex;OMFBPVAO.I.H.G.S.X.
0.3032.10.90At5g43320834350ckl8 (Casein Kinase I-like 8)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAO.I.H.G.S.X.
0.2930.30.90At1g47550841164unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane, exocyst;MFPOBAO.I.H.G.S.X.
0.2930.30.91At1g03280838581transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family proteinF:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:endomembrane system, transcription factor TFIIE complex;MFOPVBAO.I.H.G.S.X.
0.2930.30.90At5g06260830513nucleolar protein-relatedF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.2930.30.90At3g52850824451VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.O.I.H.G.S.X.
0.2830.30.90At4g32600829395zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.2726.20.90At1g18260838406suppressor of lin-12-like protein-related / sel-1 protein-relatedF:binding;P:biological_process unknown;C:endoplasmic reticulum, membrane;BOMFPVO.I.H.G.S.X.
0.2624.40.89At3g09850820143D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MBOFPAVO.I.H.G.S.X.
0.2522.60.90At5g41940834199RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBVAO.I.H.G.S.X.
0.2522.60.90At5g66810836814-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2420.70.90At5g52530835329dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPVAO.I.H.G.S.X.
0.2420.70.90At4g31410829268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.2420.70.90At3g25840822178protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus;MOFPBVAO.I.H.G.S.X.
0.2319.30.89At3g43230823398zinc finger (FYVE type) family proteinF:phosphoinositide binding, zinc ion binding;P:signal transduction;C:cellular_component unknown;MFOPBVO.I.H.G.S.X.
0.2217.50.90At3g12980820484HAC5Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.O.I.H.G.S.X.
0.2217.50.90At4g10570826649UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9)encodes a ubiquitin-specific protease family member, UBP9.O.I.H.G.S.X.
0.2115.80.90At4g15475827219F-box family protein (FBL4)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVO.I.H.G.S.X.
0.2115.80.90At5g35980833590protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAO.I.H.G.S.X.
0.2014.40.90At3g62240825397zinc finger (C2H2 type) family proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;OMFBPVO.I.H.G.S.X.
0.2014.40.89At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.O.I.H.G.S.X.
0.2014.40.90At1g66340842951ETR1 (ETHYLENE RESPONSE 1)Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.O.I.H.G.S.X.
0.1912.70.89At4g32160829348phox (PX) domain-containing proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAVO.I.H.G.S.X.
0.1912.70.89At1g08620837384transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.H.G.S.X.
0.1811.40.90At3g48050823960DNA binding / protein binding / transcription regulatorF:protein binding, transcription regulator activity, DNA binding;P:transcription;C:nucleus;MOBFPVAO.I.H.G.S.X.
0.1811.40.89At5g61500836271ATG3F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.1710.20.91At3g19950821533zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.H.G.S.X.
0.1710.20.90At3g13200820510EMB2769 (EMBRYO DEFECTIVE 2769)F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVAO.I.H.G.S.X.
0.168.80.90At2g17190816224ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVAO.I.H.G.S.X.
0.168.80.90At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.168.80.89At3g54860824651vacuolar protein sorting protein, putativeHomologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.157.80.89At3g63150825490MIRO2 (MIRO-RELATED GTP-ASE 2)Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response.O.I.H.G.S.X.
0.135.80.90At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.O.I.H.G.S.X.
0.114.10.89At2g25740817117ATP-dependent protease La (LON) domain-containing proteinF:ATP-dependent peptidase activity;P:N-terminal protein myristoylation, ATP-dependent proteolysis;C:cellular_component unknown;BOMPFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.399.8GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
45.799.8GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
40.399.8GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
33.299.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.999.7GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
26.899.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.799.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.099.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.799.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.699.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.699.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.499.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.499.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.999.6GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.099.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
19.399.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.399.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.199.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.999.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.499.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.299.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.599.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.399.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.699.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.699.4GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.399.4GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.999.3E-MEXP-285-raw-cel-440782725
12.699.3GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
11.799.3GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.599.3GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.399.3GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
11.099.2GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.699.2E-MEXP-285-raw-cel-440782791
9.999.1E-MEXP-828-raw-cel-1156922944
9.599.1GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.299.1GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
8.999.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0602GO:0006914The process by which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.Link to AmiGO
0.0421GO:0016598The posttranslational conjugation of arginine to the N-terminal aspartate or glutamate of a protein; required for the degradation of the protein via the ubiquitin pathway.Link to AmiGO
0.0411GO:0006473The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.036104140Regulation of autophagyLink to KEGG PATHWAY
0.025103022Basal transcription factorsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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