Co-expression analysis

Gene ID At5g47870
Gene name unknown protein
Module size 94 genes
NF 0.23
%ile 23.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g47870834838unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.4253.90.87At1g08470837368strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane;PBMOFAO.I.H.G.S.X.
0.3846.70.87At2g22370816769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3745.00.87At1g72480843580-F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;MFPOO.I.H.G.S.X.
0.3643.60.87At5g23550832421-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.3643.60.87At1g30825839965DIS2 (DISTORTED TRICHOMES 2)Involved in trichome maturation. mutant displays enlarged trichomesO.I.H.G.S.X.
0.3541.60.86At5g41760834180nucleotide-sugar transporter family proteinF:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPFO.I.H.G.S.X.
0.3541.60.87At3g49850824147TRB3 (TELOMERE REPEAT BINDING FACTOR 3)Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.O.I.H.G.S.X.
0.3439.80.87At5g02280831680synbindin, putativeF:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:cis-Golgi network;MFOPO.I.H.G.S.X.
0.3235.70.86At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABO.I.H.G.S.X.
0.3235.70.86At1g14140837973mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.H.G.S.X.
0.3235.70.87At4g34215829570hydrolaseEncodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.O.I.H.G.S.X.
0.3133.80.87At1g19580838545GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.3133.80.86At1g19120838495small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOAO.I.H.G.S.X.
0.3133.80.86At3g24040821989glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system, membrane;MPVOBO.I.H.G.S.X.
0.3032.10.87At1g29040839778unknown proteinF:unknown;P:unknown;C:chloroplast, vacuole;BOPO.I.H.G.S.X.
0.3032.10.86At4g35410829694clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3032.10.88At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.O.I.H.G.S.X.
0.2930.30.87At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2930.30.87At4g17420827453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.H.G.S.X.
0.2930.30.86At1g71750843505phosphoribosyltransferase family proteinF:transferase activity, hypoxanthine phosphoribosyltransferase activity;P:nucleoside metabolic process, purine ribonucleoside salvage;C:cytoplasm;BOMAPFO.I.H.G.S.X.
0.2830.30.87At1g05430837044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.30.86At2g31710817727unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2830.30.87At1g30120839891PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.O.I.H.G.S.X.
0.2830.30.86At4g29870829109-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOO.I.H.G.S.X.
0.2830.30.87At1g04260839565MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.O.I.H.G.S.X.
0.2830.30.86At1g13870837946DRL1 (DEFORMED ROOTS AND LEAVES 1)Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots.O.I.H.G.S.X.
0.2830.30.86At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.2726.20.86At1g10430837583PP2A-2Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.2726.20.87At3g48040823959ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.O.I.H.G.S.X.
0.2726.20.86At4g38040829960exostosin family proteinF:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFVO.I.H.G.S.X.
0.2726.20.86At5g22280832288unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.2726.20.88At2g42210818821mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family.O.I.H.G.S.X.
0.2624.40.87At3g52090824372NRPB11Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.O.I.H.G.S.X.
0.2624.40.86At2g05755815126integral membrane family proteinF:unknown;P:unknown;C:membrane;OBMFAPO.I.H.G.S.X.
0.2624.40.87At3g25040822095ER lumen protein retaining receptor, putative / HDEL receptor, putativeF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:endomembrane system, integral to membrane;MOFPO.I.H.G.S.X.
0.2522.60.86At1g18340838415basal transcription factor complex subunit-relatedF:general RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:core TFIIH complex;MFOPO.I.H.G.S.X.
0.2522.60.86At1g43190840918polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOFO.I.H.G.S.X.
0.2522.60.86At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFO.I.H.G.S.X.
0.2522.60.86At5g633808364574-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.O.I.H.G.S.X.
0.2420.70.86At1g21710838775OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.O.I.H.G.S.X.
0.2420.70.86At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFO.I.H.G.S.X.
0.2420.70.86At4g00170828017vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2420.70.86At1g10670837610ACLA-1One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.O.I.H.G.S.X.
0.2319.30.86At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.
0.2319.30.86At4g15415827211ATB' GAMMAB' regulatory subunit of PP2A (AtB'gamma)O.I.H.G.S.X.
0.2319.30.86At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.2319.30.86At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.2319.30.86At5g05010830383clathrin adaptor complexes medium subunit-relatedF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane;MFOPBO.I.H.G.S.X.
0.2319.30.86At2g30980817649ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.O.I.H.G.S.X.
0.2319.30.87At4g39240830080kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVFO.I.H.G.S.X.
0.2217.50.88At1g68070843135zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.2217.50.87At4g32930829430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.2217.50.87At1g32050840097secretory carrier membrane protein (SCAMP) family proteinF:transmembrane transporter activity;P:protein transport;C:mitochondrion, plasma membrane;MPOFO.I.H.G.S.X.
0.2217.50.86At1g60660842360CB5LP (CYTOCHROME B5-LIKE PROTEIN)member of Cytochromes b5O.I.H.G.S.X.
0.2217.50.86At2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.S.X.
0.2217.50.86At3g07200819908zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVO.I.H.G.S.X.
0.2217.50.86At5g54750835565transport protein particle (TRAPP) component Bet3, putativeF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2217.50.86At1g78690844205phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:unknown;BMOFPO.I.H.G.S.X.
0.2217.50.86At2g44525819060unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFPO.I.H.G.S.X.
0.2217.50.86At4g35980829752unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.86At1g55130841956endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFBO.I.H.G.S.X.
0.2115.80.86At1g47830841199clathrin coat assembly protein, putativeF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOPO.I.H.G.S.X.
0.2115.80.86At2g28390817387SAND family proteinF:unknown;P:unknown;C:chloroplast;MFOBPAVO.I.H.G.S.X.
0.2014.40.86At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2014.40.86At1g05500837052NTMC2T2.1F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOO.I.H.G.S.X.
0.2014.40.86At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.2014.40.86At3g18430821372calcium-binding EF hand family proteinF:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFBO.I.H.G.S.X.
0.2014.40.88At1g243608390533-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseF:3-oxoacyl-[acyl-carrier-protein] reductase activity;P:metabolic process, fatty acid biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVO.I.H.G.S.X.
0.2014.40.86At2g43360818937BIO2 (BIOTIN AUXOTROPH 2)Catalyzes the conversion of dethiobiotin to biotin.O.I.H.G.S.X.
0.2014.40.86At4g24550828557clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.1912.70.86At3g20390821584endoribonuclease L-PSP family proteinF:endoribonuclease activity;P:response to cadmium ion;C:thylakoid, mitochondrion, chloroplast, plastid, vacuole;BOFMAPO.I.H.G.S.X.
0.1912.70.86At3g12130820388KH domain-containing protein / zinc finger (CCCH type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOFBO.I.H.G.S.X.
0.1811.40.86At5g20060832128phospholipase/carboxylesterase family proteinF:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.H.G.S.X.
0.1811.40.86At3g22590821831RNA pol II accessory factor Cdc73 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.1811.40.86At1g05055839332GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.O.I.H.G.S.X.
0.1811.40.86At2g41600818758-F:molecular_function unknown;P:biological_process unknown;C:mitochondrial matrix;PO.I.H.G.S.X.
0.1811.40.86At3g52300824395ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)F:hydrogen ion transmembrane transporter activity;P:response to salt stress;C:in 8 components;MPFOO.I.H.G.S.X.
0.1811.40.87At5g17770831645ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.O.I.H.G.S.X.
0.1710.20.86At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.1710.20.86At3g11200820290AL2 (ALFIN-LIKE 2)AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.1710.20.87At3g12010820375-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.168.80.86At1g22450838851COX6B (CYTOCHROME C OXIDASE 6B)subunit 6b of cytochrome c oxidaseO.I.H.G.S.X.
0.168.80.86At2g28380817386DRB2 (DSRNA-BINDING PROTEIN 2)Encodes a cytoplasmic dsRNA-binding protein.O.I.H.G.S.X.
0.168.80.86At2g47580819371U1A (SPLICEOSOMAL PROTEIN U1A)encodes spliceosomal protein U1AO.I.H.G.S.X.
0.157.80.86At3g18380821367sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO.I.H.G.S.X.
0.157.80.86At1g54610841903protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.157.80.86At2g26770817218plectin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.157.80.86At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFO.I.H.G.S.X.
0.157.80.86At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.O.I.H.G.S.X.
0.146.80.86At3g51050824269FG-GAP repeat-containing proteinF:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPMO.I.H.G.S.X.
0.135.80.86At3g06350819809MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)F:NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast stroma, chloroplast;BOAFPO.I.H.G.S.X.
0.135.80.86At3g58580825027hydrolaseF:hydrolase activity;P:unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.124.90.86At5g661208367443-dehydroquinate synthase, putativeF:3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates;P:aromatic amino acid family biosynthetic process, biosynthetic process;C:chloroplast;OBFAPMVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.899.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.299.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.299.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.099.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
43.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.499.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.199.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.999.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.699.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.099.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.599.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
27.999.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.599.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.899.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.999.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.199.5GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.299.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.899.2E-ATMX-35-raw-cel-1574334816
10.699.2E-ATMX-35-raw-cel-1574334832
10.599.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.599.2GSM284385Arabidopsis GEP6GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.599.1GSM133968Birnbaum_1-19_LRC-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
9.599.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.199.1GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.799.0GSM133969Birnbaum_1-20_LRC-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0576GO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.Link to AmiGO
0.0513GO:0006888The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.Link to AmiGO
0.0475GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.031203022Basal transcription factorsLink to KEGG PATHWAY
0.030401063Biosynthesis of alkaloids derived from shikimate pathwayLink to KEGG PATHWAY
0.030200400Phenylalanine, tyrosine and tryptophan biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage