CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g46350

Gene name WRKY8

Module size 5 genes

NF 0.10

%ile 6.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At5g46350 834678 WRKY8 member of WRKY Transcription Factor; Group II-c O.I. H.G. S.X.
0.33 38.1 0.69 At5g66890 836823 disease resistance protein (CC-NBS-LRR class), putative F:unknown;P:defense response;C:unknown;PMBOFAV O.I. H.G. S.X.
0.20 14.4 0.72 At5g48400 834895 ATGLR1.2 member of Putative ligand-gated ion channel subunit family O.I. H.G. S.X.
0.05 1.1 0.69 At3g51660 824329 macrophage migration inhibitory factor family protein / MIF family protein F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB O.I. H.G. S.X.
0.04 0.9 0.69 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.40	50.8	1.00	At5g46350	834678	WRKY8	member of WRKY Transcription Factor; Group II-c	O.I.	H.G.	S.X.
0.33	38.1	0.69	At5g66890	836823	disease resistance protein (CC-NBS-LRR class), putative	F:unknown;P:defense response;C:unknown;PMBOFAV	O.I.	H.G.	S.X.
0.20	14.4	0.72	At5g48400	834895	ATGLR1.2	member of Putative ligand-gated ion channel subunit family	O.I.	H.G.	S.X.
0.05	1.1	0.69	At3g51660	824329	macrophage migration inhibitory factor family protein / MIF family protein	F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB	O.I.	H.G.	S.X.
0.04	0.9	0.69	At5g38900	833882	DSBA oxidoreductase family protein	F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
79.0 99.9 E-MEXP-1138-raw-cel-1432773290
77.9 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
76.6 99.9 E-MEXP-1138-raw-cel-1432773258
72.2 99.9 E-MEXP-1138-raw-cel-1432773322
61.4 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
58.6 99.8 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
58.3 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.9 99.8 E-MEXP-1138-raw-cel-1432773354
52.9 99.8 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
50.3 99.8 E-MEXP-1138-raw-cel-1432773162
50.2 99.8 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
48.5 99.8 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
48.4 99.8 E-MEXP-1138-raw-cel-1432773034
48.4 99.8 E-MEXP-1138-raw-cel-1432773226
46.5 99.8 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
44.9 99.8 E-MEXP-1138-raw-cel-1432773066
43.1 99.8 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
42.3 99.8 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
38.8 99.8 E-MEXP-1138-raw-cel-1432773386
38.4 99.8 E-MEXP-1138-raw-cel-1432772682
38.0 99.8 E-MEXP-1138-raw-cel-1432773194
36.5 99.7 E-ATMX-35-raw-cel-1574334880
35.7 99.7 E-MEXP-1138-raw-cel-1432772618
34.8 99.7 E-MEXP-285-raw-cel-440782725
33.7 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.5 99.7 E-MEXP-1138-raw-cel-1432772554
33.0 99.7 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
32.9 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.5 99.7 E-ATMX-35-raw-cel-1574334864
32.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.4 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.2 99.7 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.2 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.9 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.8 99.7 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
30.6 99.7 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
30.5 99.7 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.1 99.7 E-MEXP-1138-raw-cel-1432772586
29.8 99.7 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
29.6 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.5 99.7 E-MEXP-1138-raw-cel-1432772650
29.2 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.5 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.3 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.1 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.1 99.7 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
27.4 99.7 E-MEXP-285-raw-cel-440782791
27.1 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.7 99.7 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
26.3 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.2 99.7 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
25.8 99.7 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
25.7 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.5 99.7 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
25.4 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.8 99.6 E-MEXP-1138-raw-cel-1432772522
24.5 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.4 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.3 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0 99.6 E-MEXP-1138-raw-cel-1432772906
22.5 99.6 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
22.4 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.2 99.6 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
21.6 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.5 99.6 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
18.6 99.5 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
18.4 99.5 E-MEXP-1138-raw-cel-1432772778
18.4 99.5 E-MEXP-1138-raw-cel-1432773002
18.1 99.5 E-MEXP-1138-raw-cel-1432772714
17.8 99.5 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.3 99.5 E-MEXP-1138-raw-cel-1432772842
17.3 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.0 99.5 E-MEXP-1138-raw-cel-1432772810
17.0 99.5 E-MEXP-1138-raw-cel-1432773130
16.8 99.5 E-MEXP-1138-raw-cel-1432772746
16.3 99.5 E-ATMX-35-raw-cel-1574334848
16.1 99.5 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.7 99.5 E-MEXP-1138-raw-cel-1432772938
15.6 99.5 E-MEXP-1138-raw-cel-1432772874
15.5 99.5 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.3 99.4 E-MEXP-1138-raw-cel-1432772970
15.3 99.4 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.0 99.4 E-MEXP-1138-raw-cel-1432773098
14.6 99.4 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.0 99.4 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.0 99.4 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.4 99.3 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.2 99.3 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.0 99.3 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
10.3 99.2 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.1 99.1 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.7 99.0 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.6 99.0 E-MEXP-1451-raw-cel-1585200266

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
79.0	99.9	E-MEXP-1138-raw-cel-1432773290
77.9	99.9	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
76.6	99.9	E-MEXP-1138-raw-cel-1432773258
72.2	99.9	E-MEXP-1138-raw-cel-1432773322
61.4	99.8	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
58.6	99.8	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
58.3	99.8	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.9	99.8	E-MEXP-1138-raw-cel-1432773354
52.9	99.8	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
50.3	99.8	E-MEXP-1138-raw-cel-1432773162
50.2	99.8	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
48.5	99.8	GSM270814	Arabidopsis cell culture, 4 h_control_rep1	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
48.4	99.8	E-MEXP-1138-raw-cel-1432773034
48.4	99.8	E-MEXP-1138-raw-cel-1432773226
46.5	99.8	GSM184924	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
44.9	99.8	E-MEXP-1138-raw-cel-1432773066
43.1	99.8	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
42.3	99.8	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
38.8	99.8	E-MEXP-1138-raw-cel-1432773386
38.4	99.8	E-MEXP-1138-raw-cel-1432772682
38.0	99.8	E-MEXP-1138-raw-cel-1432773194
36.5	99.7	E-ATMX-35-raw-cel-1574334880
35.7	99.7	E-MEXP-1138-raw-cel-1432772618
34.8	99.7	E-MEXP-285-raw-cel-440782725
33.7	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.5	99.7	E-MEXP-1138-raw-cel-1432772554
33.0	99.7	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
32.9	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.5	99.7	E-ATMX-35-raw-cel-1574334864
32.1	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.4	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.2	99.7	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.2	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.9	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.8	99.7	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
30.6	99.7	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
30.5	99.7	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
30.1	99.7	E-MEXP-1138-raw-cel-1432772586
29.8	99.7	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
29.6	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.5	99.7	E-MEXP-1138-raw-cel-1432772650
29.2	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.5	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.3	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.1	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.1	99.7	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
27.4	99.7	E-MEXP-285-raw-cel-440782791
27.1	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.7	99.7	GSM270868	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
26.3	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.2	99.7	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
25.8	99.7	GSM270853	Arabidopsis cell culture, 4 h_control_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
25.7	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.5	99.7	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
25.4	99.6	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.8	99.6	E-MEXP-1138-raw-cel-1432772522
24.5	99.6	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.4	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.3	99.6	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0	99.6	E-MEXP-1138-raw-cel-1432772906
22.5	99.6	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
22.4	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.2	99.6	GSM270870	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
21.6	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.5	99.6	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
18.6	99.5	GSM270866	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
18.4	99.5	E-MEXP-1138-raw-cel-1432772778
18.4	99.5	E-MEXP-1138-raw-cel-1432773002
18.1	99.5	E-MEXP-1138-raw-cel-1432772714
17.8	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
17.3	99.5	E-MEXP-1138-raw-cel-1432772842
17.3	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
17.0	99.5	E-MEXP-1138-raw-cel-1432772810
17.0	99.5	E-MEXP-1138-raw-cel-1432773130
16.8	99.5	E-MEXP-1138-raw-cel-1432772746
16.3	99.5	E-ATMX-35-raw-cel-1574334848
16.1	99.5	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.7	99.5	E-MEXP-1138-raw-cel-1432772938
15.6	99.5	E-MEXP-1138-raw-cel-1432772874
15.5	99.5	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
15.3	99.4	E-MEXP-1138-raw-cel-1432772970
15.3	99.4	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
15.0	99.4	E-MEXP-1138-raw-cel-1432773098
14.6	99.4	GSM131590	ATGE_35_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.0	99.4	GSM133767	Lindsey_1-19_torpedo-basal_Rep4_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.0	99.4	GSM311289	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.4	99.3	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
12.2	99.3	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
12.0	99.3	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.1	99.1	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.7	99.0	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.6	99.0	E-MEXP-1451-raw-cel-1585200266

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0006954 The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
0.074 1 GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
0.033 1 GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.

SF	Genes	GO ID	Process Name
0.222	1	GO:0006954	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
0.074	1	GO:0006874	Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
0.033	1	GO:0051707	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.795.1.A1_at, orthologous to the query gene, At5g46350

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 ZmAffx.795.1.A1_at - - - 3e-3 At5g46350 WRKY8 O.I. H.G. S.X.
0.40 48.5 Zm.1115.1.A1_at - - - 1e+0 At4g00210 LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31) O.I. H.G. S.X.
0.38 44.2 Zm.17344.1.S1_at - - - 4e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative O.I. H.G. S.X.
0.36 41.3 Zm.2521.1.A1_at - hypothetical protein LOC100276170 - 1e-2 At5g63980 SAL1 O.I. H.G. S.X.
0.35 38.9 ZmAffx.241.1.A1_at - - - 3e+0 At1g75190 unknown protein O.I. H.G. S.X.
0.33 36.0 Zm.3288.1.A1_at - immediate-early protein RSP40 - 2e-2 At3g09032 unknown protein O.I. H.G. S.X.
0.29 28.1 ZmAffx.898.1.A1_at - - - 8e-1 At3g15280 unknown protein O.I. H.G. S.X.
0.25 21.3 Zm.4299.1.S1_at - hypothetical protein LOC100279924 - 5e-14 At3g21630 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) O.I. H.G. S.X.
0.24 19.8 Zm.13669.2.A1_at - - - 2e-9 At4g02630 protein kinase family protein O.I. H.G. S.X.
0.23 18.6 Zm.6559.1.A1_at - - - 3e-14 At5g26830 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) O.I. H.G. S.X.
0.20 14.2 Zm.7540.1.S1_at - hypothetical protein LOC100192075 - 1e-5 At4g29130 HXK1 (HEXOKINASE 1) O.I. H.G. S.X.
0.18 11.6 ZmAffx.852.1.A1_at - - - 1e-11 At3g12690 AGC1.5 (AGC KINASE 1.5) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.0	ZmAffx.795.1.A1_at	-	-	-	3e-3	At5g46350	WRKY8	O.I.	H.G.	S.X.
0.40	48.5	Zm.1115.1.A1_at	-	-	-	1e+0	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	O.I.	H.G.	S.X.
0.38	44.2	Zm.17344.1.S1_at	-	-	-	4e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.
0.36	41.3	Zm.2521.1.A1_at	-	hypothetical protein LOC100276170	-	1e-2	At5g63980	SAL1	O.I.	H.G.	S.X.
0.35	38.9	ZmAffx.241.1.A1_at	-	-	-	3e+0	At1g75190	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	Zm.3288.1.A1_at	-	immediate-early protein RSP40	-	2e-2	At3g09032	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	ZmAffx.898.1.A1_at	-	-	-	8e-1	At3g15280	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	Zm.4299.1.S1_at	-	hypothetical protein LOC100279924	-	5e-14	At3g21630	CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)	O.I.	H.G.	S.X.
0.24	19.8	Zm.13669.2.A1_at	-	-	-	2e-9	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.23	18.6	Zm.6559.1.A1_at	-	-	-	3e-14	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.
0.20	14.2	Zm.7540.1.S1_at	-	hypothetical protein LOC100192075	-	1e-5	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.
0.18	11.6	ZmAffx.852.1.A1_at	-	-	-	1e-11	At3g12690	AGC1.5 (AGC KINASE 1.5)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	At5g46350
Gene name	WRKY8
Module size	5 genes
NF	0.10
%ile	6.5

Co-expression analysis

Gene ID At5g46350 Gene name WRKY8 Module size 5 genes NF 0.10 %ile 6.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID At5g46350

Gene name WRKY8

Module size 5 genes

NF 0.10

%ile 6.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera