Co-expression analysis

Gene ID At5g46350
Gene name WRKY8
Module size 5 genes
NF 0.10
%ile 6.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4050.81.00At5g46350834678WRKY8member of WRKY Transcription Factor; Group II-cO.I.H.G.S.X.
0.3338.10.69At5g66890836823disease resistance protein (CC-NBS-LRR class), putativeF:unknown;P:defense response;C:unknown;PMBOFAVO.I.H.G.S.X.
0.2014.40.72At5g48400834895ATGLR1.2member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.051.10.69At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBO.I.H.G.S.X.
0.040.90.69At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
79.099.9E-MEXP-1138-raw-cel-1432773290
77.999.9GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
76.699.9E-MEXP-1138-raw-cel-1432773258
72.299.9E-MEXP-1138-raw-cel-1432773322
61.499.8GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
58.699.8GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
58.399.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
52.999.8E-MEXP-1138-raw-cel-1432773354
52.999.8GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
50.399.8E-MEXP-1138-raw-cel-1432773162
50.299.8GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
48.599.8GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
48.499.8E-MEXP-1138-raw-cel-1432773034
48.499.8E-MEXP-1138-raw-cel-1432773226
46.599.8GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
44.999.8E-MEXP-1138-raw-cel-1432773066
43.199.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
42.399.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
38.899.8E-MEXP-1138-raw-cel-1432773386
38.499.8E-MEXP-1138-raw-cel-1432772682
38.099.8E-MEXP-1138-raw-cel-1432773194
36.599.7E-ATMX-35-raw-cel-1574334880
35.799.7E-MEXP-1138-raw-cel-1432772618
34.899.7E-MEXP-285-raw-cel-440782725
33.799.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.599.7E-MEXP-1138-raw-cel-1432772554
33.099.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
32.999.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.599.7E-ATMX-35-raw-cel-1574334864
32.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.299.7GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
31.299.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.899.7GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
30.699.7GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
30.599.7GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
30.199.7E-MEXP-1138-raw-cel-1432772586
29.899.7GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
29.699.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.599.7E-MEXP-1138-raw-cel-1432772650
29.299.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
27.499.7E-MEXP-285-raw-cel-440782791
27.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.799.7GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
26.399.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.299.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
25.899.7GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
25.799.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.599.7GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
25.499.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.899.6E-MEXP-1138-raw-cel-1432772522
24.599.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.499.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.399.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.099.6E-MEXP-1138-raw-cel-1432772906
22.599.6GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
22.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.299.6GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
21.699.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.599.6GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.699.5GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
18.499.5E-MEXP-1138-raw-cel-1432772778
18.499.5E-MEXP-1138-raw-cel-1432773002
18.199.5E-MEXP-1138-raw-cel-1432772714
17.899.5GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
17.399.5E-MEXP-1138-raw-cel-1432772842
17.399.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.099.5E-MEXP-1138-raw-cel-1432772810
17.099.5E-MEXP-1138-raw-cel-1432773130
16.899.5E-MEXP-1138-raw-cel-1432772746
16.399.5E-ATMX-35-raw-cel-1574334848
16.199.5GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.799.5E-MEXP-1138-raw-cel-1432772938
15.699.5E-MEXP-1138-raw-cel-1432772874
15.599.5GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
15.399.4E-MEXP-1138-raw-cel-1432772970
15.399.4GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.099.4E-MEXP-1138-raw-cel-1432773098
14.699.4GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
14.099.4GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
13.099.4GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
12.499.3GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
12.299.3GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
12.099.3GSM184919Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.399.2GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
9.199.1GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.799.0GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0E-MEXP-1451-raw-cel-1585200266

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0006954The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.Link to AmiGO
0.0741GO:0006874Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.Link to AmiGO
0.0331GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.795.1.A1_at, orthologous to the query gene, At5g46350

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0ZmAffx.795.1.A1_at---3e-3At5g46350WRKY8O.I.H.G.S.X.
0.4048.5Zm.1115.1.A1_at---1e+0At4g00210LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)O.I.H.G.S.X.
0.3844.2Zm.17344.1.S1_at---4e+0At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.3641.3Zm.2521.1.A1_at-hypothetical protein LOC100276170-1e-2At5g63980SAL1O.I.H.G.S.X.
0.3538.9ZmAffx.241.1.A1_at---3e+0At1g75190unknown proteinO.I.H.G.S.X.
0.3336.0Zm.3288.1.A1_at-immediate-early protein RSP40-2e-2At3g09032unknown proteinO.I.H.G.S.X.
0.2928.1ZmAffx.898.1.A1_at---8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.2521.3Zm.4299.1.S1_at-hypothetical protein LOC100279924-5e-14At3g21630CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)O.I.H.G.S.X.
0.2419.8Zm.13669.2.A1_at---2e-9At4g02630protein kinase family proteinO.I.H.G.S.X.
0.2318.6Zm.6559.1.A1_at---3e-14At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.2014.2Zm.7540.1.S1_at-hypothetical protein LOC100192075-1e-5At4g29130HXK1 (HEXOKINASE 1)O.I.H.G.S.X.
0.1811.6ZmAffx.852.1.A1_at---1e-11At3g12690AGC1.5 (AGC KINASE 1.5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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