CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g45380

Gene name sodium:solute symporter family protein

Module size 18 genes

NF 0.07

%ile 4.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. H.G. S.X.
0.40 50.8 0.72 At5g33290 833302 XGD1 (XYLOGALACTURONAN DEFICIENT 1) Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis. O.I. H.G. S.X.
0.31 33.8 0.74 At2g19130 816430 S-locus lectin protein kinase family protein F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.29 30.3 0.72 At5g61010 836222 ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.28 30.3 0.71 At3g26210 822222 CYP71B23 putative cytochrome P450 O.I. H.G. S.X.
0.26 24.4 0.71 At2g29990 817549 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM O.I. H.G. S.X.
0.25 22.6 0.70 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. H.G. S.X.
0.23 19.3 0.72 At5g37600 833738 ATGSR1 encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. H.G. S.X.
0.22 17.5 0.70 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. O.I. H.G. S.X.
0.19 12.7 0.70 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. O.I. H.G. S.X.
0.12 4.9 0.70 At3g52710 824437 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.12 4.9 0.72 At4g12070 826815 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.11 4.1 0.72 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. H.G. S.X.
0.10 3.4 0.70 At4g33300 829466 ADR1-L1 (ADR1-like 1) F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFA O.I. H.G. S.X.
0.09 2.8 0.70 At3g45620 823704 transducin family protein / WD-40 repeat family protein This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase O.I. H.G. S.X.
0.09 2.8 0.73 At4g05590 825927 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. H.G. S.X.
0.03 0.6 0.71 At1g75410 843877 BLH3 (BEL1-LIKE HOMEODOMAIN 3) BEL1-like homeodomain 3 (BLH3) O.I. H.G. S.X.
0.01 0.2 0.73 At1g67940 843122 ATNAP3 member of NAP subfamily O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	H.G.	S.X.
0.40	50.8	0.72	At5g33290	833302	XGD1 (XYLOGALACTURONAN DEFICIENT 1)	Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.	O.I.	H.G.	S.X.
0.31	33.8	0.74	At2g19130	816430	S-locus lectin protein kinase family protein	F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	H.G.	S.X.
0.29	30.3	0.72	At5g61010	836222	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.28	30.3	0.71	At3g26210	822222	CYP71B23	putative cytochrome P450	O.I.	H.G.	S.X.
0.26	24.4	0.71	At2g29990	817549	NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)	F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAM	O.I.	H.G.	S.X.
0.25	22.6	0.70	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	H.G.	S.X.
0.23	19.3	0.72	At5g37600	833738	ATGSR1	encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	H.G.	S.X.
0.22	17.5	0.70	At4g13510	826983	AMT1	Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.	O.I.	H.G.	S.X.
0.19	12.7	0.70	At1g22070	838812	TGA3	Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.	O.I.	H.G.	S.X.
0.12	4.9	0.70	At3g52710	824437	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	H.G.	S.X.
0.12	4.9	0.72	At4g12070	826815	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	H.G.	S.X.
0.11	4.1	0.72	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	H.G.	S.X.
0.10	3.4	0.70	At4g33300	829466	ADR1-L1 (ADR1-like 1)	F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFA	O.I.	H.G.	S.X.
0.09	2.8	0.70	At3g45620	823704	transducin family protein / WD-40 repeat family protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	O.I.	H.G.	S.X.
0.09	2.8	0.73	At4g05590	825927	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	H.G.	S.X.
0.03	0.6	0.71	At1g75410	843877	BLH3 (BEL1-LIKE HOMEODOMAIN 3)	BEL1-like homeodomain 3 (BLH3)	O.I.	H.G.	S.X.
0.01	0.2	0.73	At1g67940	843122	ATNAP3	member of NAP subfamily	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.6 99.9 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
105.8 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
90.6 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.7 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
83.2 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
80.6 99.9 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
78.4 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
72.0 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
70.3 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.0 99.8 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
66.7 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.8 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.4 99.8 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
60.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.9 99.8 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
59.8 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.1 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.9 99.8 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
51.3 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.0 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.2 99.8 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
46.1 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.9 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4 99.8 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
38.1 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.2 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.8 99.7 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
31.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.3 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.9 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.4 99.6 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.1 99.6 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
23.6 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.0 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.7 99.6 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
19.0 99.5 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.8 99.5 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
16.0 99.5 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
15.0 99.4 GSM284388 Arabidopsis GMPE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.9 99.4 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
14.4 99.4 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
13.2 99.4 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.2 99.2 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.5 99.1 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
8.6 99.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
116.6	99.9	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
105.8	99.9	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
90.6	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.7	99.9	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
83.2	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
80.6	99.9	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
78.4	99.9	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
72.0	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
70.3	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.0	99.8	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
66.7	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
64.0	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.8	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.2	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.4	99.8	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
60.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.9	99.8	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
59.8	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.1	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.9	99.8	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
51.3	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.0	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
49.2	99.8	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
46.1	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.9	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4	99.8	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
38.1	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.2	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.8	99.7	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
31.8	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.3	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.9	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.4	99.6	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.1	99.6	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
23.6	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.0	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.7	99.6	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
19.0	99.5	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.8	99.5	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
16.0	99.5	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
15.0	99.4	GSM284388	Arabidopsis GMPE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.9	99.4	GSM133118	RIKEN-YAMAUCHI1B	GSE5687	AtGenExpress: Different temperature treatment of seeds
14.4	99.4	GSM131704	ATGE_83_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
13.2	99.4	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.2	99.2	GSM284389	Arabidopsis GMPE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
9.5	99.1	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
8.6	99.0	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0010398 The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues.
0.095 1 GO:0045489 The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
0.091 1 GO:0006624 The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.

SF	Genes	GO ID	Process Name
0.105	1	GO:0010398	The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues.
0.095	1	GO:0045489	The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
0.091	1	GO:0006624	The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.034 1 00250 Alanine, aspartate and glutamate metabolism
0.032 1 00910 Nitrogen metabolism
0.029 1 00330 Arginine and proline metabolism

SF	Genes	KEGG ID	Pathway name
0.034	1	00250	Alanine, aspartate and glutamate metabolism
0.032	1	00910	Nitrogen metabolism
0.029	1	00330	Arginine and proline metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g45380
Gene name	sodium:solute symporter family protein
Module size	18 genes
NF	0.07
%ile	4.5

Co-expression analysis

Gene ID At5g45380 Gene name sodium:solute symporter family protein Module size 18 genes NF 0.07 %ile 4.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.034100250Alanine, aspartate and glutamate metabolism0.032100910Nitrogen metabolism0.029100330Arginine and proline metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g45380

Gene name sodium:solute symporter family protein

Module size 18 genes

NF 0.07

%ile 4.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.034 1 00250 Alanine, aspartate and glutamate metabolism
0.032 1 00910 Nitrogen metabolism
0.029 1 00330 Arginine and proline metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays