CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g45200

Gene name disease resistance protein (TIR-NBS-LRR class), putative

Module size 14 genes

NF 0.31

%ile 38.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.59 74.7 1.00 At5g45200 834556 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. H.G. S.X.
0.57 73.8 0.71 At4g31100 829237 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.45 58.3 0.70 At1g17300 838302 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.44 57.2 0.68 At2g31020 817653 ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPBV O.I. H.G. S.X.
0.38 46.7 0.75 At5g40100 834007 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:plasma membrane, chloroplast envelope;PMBOFAV O.I. H.G. S.X.
0.36 43.6 0.71 At2g13910 3768458 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 0.69 At5g44160 834439 NUC (nutcracker) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF O.I. H.G. S.X.
0.29 30.3 0.70 At3g06990 819884 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.26 24.4 0.70 At4g37340 829889 CYP81D3 member of CYP81D O.I. H.G. S.X.
0.23 19.3 0.68 At3g50010 824163 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.22 17.5 0.71 At5g65790 836708 MYB68 (MYB DOMAIN PROTEIN 68) Encodes a putative MYB transcription factor. O.I. H.G. S.X.
0.20 14.4 0.71 At4g34880 829640 amidase family protein F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:endomembrane system;BOMFPA O.I. H.G. S.X.
0.19 12.7 0.71 At5g16900 831553 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.15 7.8 0.72 At5g43730 834393 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.59	74.7	1.00	At5g45200	834556	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	H.G.	S.X.
0.57	73.8	0.71	At4g31100	829237	wall-associated kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.45	58.3	0.70	At1g17300	838302	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.44	57.2	0.68	At2g31020	817653	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A)	F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPBV	O.I.	H.G.	S.X.
0.38	46.7	0.75	At5g40100	834007	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:plasma membrane, chloroplast envelope;PMBOFAV	O.I.	H.G.	S.X.
0.36	43.6	0.71	At2g13910	3768458	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	0.69	At5g44160	834439	NUC (nutcracker)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF	O.I.	H.G.	S.X.
0.29	30.3	0.70	At3g06990	819884	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	H.G.	S.X.
0.26	24.4	0.70	At4g37340	829889	CYP81D3	member of CYP81D	O.I.	H.G.	S.X.
0.23	19.3	0.68	At3g50010	824163	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.22	17.5	0.71	At5g65790	836708	MYB68 (MYB DOMAIN PROTEIN 68)	Encodes a putative MYB transcription factor.	O.I.	H.G.	S.X.
0.20	14.4	0.71	At4g34880	829640	amidase family protein	F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:endomembrane system;BOMFPA	O.I.	H.G.	S.X.
0.19	12.7	0.71	At5g16900	831553	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.15	7.8	0.72	At5g43730	834393	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
116.9 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
71.8 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.6 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.7 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.9 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.1 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
60.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.6 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.9 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.8 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.9 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.5 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.0 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.0 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.6 99.7 E-MEXP-1451-raw-cel-1585200170
36.2 99.7 E-MEXP-1451-raw-cel-1585200202
29.7 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.2 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.1 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9 99.7 E-MEXP-1451-raw-cel-1585200234
21.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.7 99.6 E-MEXP-1451-raw-cel-1585200266
17.6 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.1 99.4 E-ATMX-35-raw-cel-1574334848
12.1 99.3 E-ATMX-35-raw-cel-1574334864
11.3 99.3 E-ATMX-35-raw-cel-1574334880
11.2 99.2 E-MEXP-285-raw-cel-440782725
10.4 99.2 GSM131687 ATGE_76_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
10.3 99.2 GSM131686 ATGE_76_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.6 99.1 E-MEXP-285-raw-cel-440782791
9.4 99.1 GSM131685 ATGE_76_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.9 99.0 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
116.9	99.9	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
71.8	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.6	99.9	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
64.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.7	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.9	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.1	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
60.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
59.6	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.0	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.9	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
57.8	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.0	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.9	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.5	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.7	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.7	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.0	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.0	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.6	99.7	E-MEXP-1451-raw-cel-1585200170
36.2	99.7	E-MEXP-1451-raw-cel-1585200202
29.7	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
27.2	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.1	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.9	99.7	E-MEXP-1451-raw-cel-1585200234
21.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.7	99.6	E-MEXP-1451-raw-cel-1585200266
17.6	99.5	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.1	99.4	E-ATMX-35-raw-cel-1574334848
12.1	99.3	E-ATMX-35-raw-cel-1574334864
11.3	99.3	E-ATMX-35-raw-cel-1574334880
11.2	99.2	E-MEXP-285-raw-cel-440782725
10.4	99.2	GSM131687	ATGE_76_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.3	99.2	GSM131686	ATGE_76_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.6	99.1	E-MEXP-285-raw-cel-440782791
9.4	99.1	GSM131685	ATGE_76_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.9	99.0	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
0.041 3 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
0.029 2 GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

SF	Genes	GO ID	Process Name
0.077	1	GO:0008202	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
0.041	3	GO:0006915	A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
0.029	2	GO:0045087	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.025 1 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.024 1 00903 Limonene and pinene degradation

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.025	1	00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.024	1	00903	Limonene and pinene degradation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At5g45200
Gene name	disease resistance protein (TIR-NBS-LRR class), putative
Module size	14 genes
NF	0.31
%ile	38.8

Co-expression analysis

Gene ID At5g45200 Gene name disease resistance protein (TIR-NBS-LRR class), putative Module size 14 genes NF 0.31 %ile 38.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.025100945Stilbenoid, diarylheptanoid and gingerol biosynthesis0.024100903Limonene and pinene degradation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g45200

Gene name disease resistance protein (TIR-NBS-LRR class), putative

Module size 14 genes

NF 0.31

%ile 38.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.025 1 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.024 1 00903 Limonene and pinene degradation

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays