Co-expression analysis

Gene ID At5g44850
Gene name -
Module size 63 genes
NF 0.64
%ile 84.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8592.41.00At5g44850834515-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.7788.00.89At2g27520817298F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.7788.00.88At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7788.00.90At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7687.40.89At4g17130--O.I.H.G.S.X.
0.7586.90.89At5g52975835376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7385.50.88At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVO.I.H.G.S.X.
0.7385.50.90At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7385.50.88At5g15380831390DRM1 (domains rearranged methylase 1)Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.O.I.H.G.S.X.
0.7385.50.87At4g31710829299ATGLR2.4member of Putative ligand-gated ion channel subunit familyO.I.H.G.S.X.
0.7284.80.87At4g28170828932unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.88At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.7184.20.87At1g78840844221F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.7083.50.88At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyO.I.H.G.S.X.
0.7083.50.88At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBO.I.H.G.S.X.
0.7083.50.89At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPO.I.H.G.S.X.
0.6982.90.88At1g67220843042HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2)F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPFO.I.H.G.S.X.
0.6982.90.88At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.91At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.6882.20.88At2g33260817889tryptophan/tyrosine permease family proteinF:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFO.I.H.G.S.X.
0.6882.20.88At2g24840817021AGL61 (AGAMOUS-LIKE 61)Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.O.I.H.G.S.X.
0.6882.20.87At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.H.G.S.X.
0.6781.60.87At2g188203768266transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.88At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.6781.60.88At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBO.I.H.G.S.X.
0.6781.60.88At5g22680832331-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6680.10.88At5g11370831008-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6680.10.89At5g37040833674F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.87At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFO.I.H.G.S.X.
0.6579.60.87At3g52510824416-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6579.60.88At5g11050830972MYB64 (myb domain protein 64)Member of R2R3-MYB transcription factor gene family.O.I.H.G.S.X.
0.6579.60.87At2g06960815265oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PBOFMO.I.H.G.S.X.
0.6579.60.86At5g52460835322EDA41 (embryo sac development arrest 41)F:unknown;P:polar nucleus fusion;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.87At5g01860831739zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;PO.I.H.G.S.X.
0.6478.90.87At5g66220836754chalcone isomeraseF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:unknown;PO.I.H.G.S.X.
0.6478.90.86At5g08090830703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO.I.H.G.S.X.
0.6378.10.87At3g58890825058syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.6378.10.87At1g78720844208protein transport protein sec61, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:membrane;BOMAFPO.I.H.G.S.X.
0.6277.30.87At2g31050817657plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POAO.I.H.G.S.X.
0.6176.70.88At1g16940838265F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.6176.70.88At5g48420834897unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.88At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6075.70.87At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.H.G.S.X.
0.5974.70.86At2g355903768541-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.89At5g12240831099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.88At2g31420817700DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.86At3g54060824573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.H.G.S.X.
0.5873.80.88At5g61090836230nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVAO.I.H.G.S.X.
0.5873.80.87At4g106903770312transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.87At1g56270842080unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.90At1g75470843883ATPUP15Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.5673.00.88At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)O.I.H.G.S.X.
0.5570.60.87At5g25860832655F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PO.I.H.G.S.X.
0.5570.60.87At4g05260825874ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POO.I.H.G.S.X.
0.5570.60.86At4g174503770187transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.86At4g05620825934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.87At2g261352745561zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPVO.I.H.G.S.X.
0.5267.40.86At1g55580842007LAS (Lateral Suppressor)Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching.O.I.H.G.S.X.
0.5267.40.86At5g40050834002F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.5065.30.88At3g42820823326transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.87At4g33870829530peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.4862.50.87At1g34440840347unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.87At1g50910841513unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
91.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
49.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
47.299.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
45.599.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.699.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.499.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.399.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.299.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.499.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.499.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.699.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.899.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.399.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.899.7GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
29.599.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.199.7GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
26.399.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6E-ATMX-35-raw-cel-1574334816
18.499.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
17.399.5E-ATMX-35-raw-cel-1574334800
13.499.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
12.699.3E-ATMX-35-raw-cel-1574334832
12.599.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.799.2GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.799.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.699.1GSM218590Protoplasted root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.599.1GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.499.1GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0472GO:0006863The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.Link to AmiGO
0.0311GO:0009559The process whereby the two uncellularized polar nuclei cellularize, fuse and acquire the specialized features of a mononucleate diploid central cell.Link to AmiGO
0.0311GO:0043066Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025100941Flavonoid biosynthesisLink to KEGG PATHWAY
0.007101061Biosynthesis of phenylpropanoidsLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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