CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g43100

Gene name aspartyl protease family protein

Module size 65 genes

NF 0.30

%ile 37.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.94 96.7 1.00 At5g43100 834326 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO O.I. H.G. S.X.
0.50 65.3 0.90 At4g19670 827711 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB O.I. H.G. S.X.
0.47 61.2 0.91 At1g21380 838737 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB O.I. H.G. S.X.
0.44 57.2 0.91 At5g19050 832024 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;FOBMPV O.I. H.G. S.X.
0.41 52.4 0.91 At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. O.I. H.G. S.X.
0.40 50.8 0.90 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO O.I. H.G. S.X.
0.39 48.4 0.90 At1g10720 837615 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVB O.I. H.G. S.X.
0.39 48.4 0.90 At1g34190 840318 anac017 (Arabidopsis NAC domain containing protein 17) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POB O.I. H.G. S.X.
0.38 46.7 0.90 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. O.I. H.G. S.X.
0.38 46.7 0.93 At5g55500 835643 XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE) Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. O.I. H.G. S.X.
0.37 45.0 0.91 At1g22040 838809 kelch repeat-containing F-box family protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;MPBOVFA O.I. H.G. S.X.
0.37 45.0 0.90 At4g13270 826957 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.36 43.6 0.91 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. O.I. H.G. S.X.
0.36 43.6 0.90 At4g38360 829993 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. H.G. S.X.
0.34 39.8 0.91 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.34 39.8 0.91 At5g05700 830454 ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence. O.I. H.G. S.X.
0.34 39.8 0.91 At3g51580 824321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV O.I. H.G. S.X.
0.34 39.8 0.91 At1g48790 841301 mov34 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.34 39.8 0.91 At5g20990 832224 B73 Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. O.I. H.G. S.X.
0.34 39.8 0.91 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF O.I. H.G. S.X.
0.34 39.8 0.90 At1g20110 838600 zinc finger (FYVE type) family protein F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA O.I. H.G. S.X.
0.33 38.1 0.90 At1g25280 839112 AtTLP10 (TUBBY LIKE PROTEIN 10) Member of TLP family O.I. H.G. S.X.
0.33 38.1 0.91 At2g17190 816224 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVA O.I. H.G. S.X.
0.33 38.1 0.91 At2g36360 818209 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA O.I. H.G. S.X.
0.33 38.1 0.90 At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF O.I. H.G. S.X.
0.33 38.1 0.91 At4g40050 830168 signal transducer F:signal transducer activity;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.32 35.7 0.90 At1g32230 840115 RCD1 (RADICAL-INDUCED CELL DEATH1) Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. O.I. H.G. S.X.
0.32 35.7 0.91 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP O.I. H.G. S.X.
0.32 35.7 0.90 At2g33630 817929 3-beta hydroxysteroid dehydrogenase/isomerase family protein F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPV O.I. H.G. S.X.
0.32 35.7 0.90 At2g38020 818380 VCL1 (VACUOLELESS 1) necessary for proper vacuole formation and morphogenesis in Arabidopsis O.I. H.G. S.X.
0.31 33.8 0.91 At5g23520 832417 - F:unknown;P:unknown;C:cytoplasm;FPMBO O.I. H.G. S.X.
0.31 33.8 0.91 At2g01980 814729 SOS1 (SALT OVERLY SENSITIVE 1) Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. O.I. H.G. S.X.
0.31 33.8 0.90 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. O.I. H.G. S.X.
0.31 33.8 0.90 At3g19770 821514 VPS9A Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development. O.I. H.G. S.X.
0.31 33.8 0.91 At4g33890 829532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.30 32.1 0.91 At1g09920 837524 TRAF-type zinc finger-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.30 32.1 0.90 At4g23460 828445 beta-adaptin, putative F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MFOPBA O.I. H.G. S.X.
0.30 32.1 0.90 At5g46860 834730 VAM3 Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164�220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. O.I. H.G. S.X.
0.29 30.3 0.90 At2g39940 818581 COI1 (CORONATINE INSENSITIVE 1) Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. O.I. H.G. S.X.
0.29 30.3 0.90 At2g44100 819016 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) GDP dissociation inhibitor involved in vesicular membrane traffic O.I. H.G. S.X.
0.29 30.3 0.90 At5g43320 834350 ckl8 (Casein Kinase I-like 8) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA O.I. H.G. S.X.
0.29 30.3 0.90 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO O.I. H.G. S.X.
0.28 30.3 0.90 At1g59580 842248 ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) encodes a mitogen-activated kinase involved in innate immunity O.I. H.G. S.X.
0.28 30.3 0.90 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.28 30.3 0.91 At3g05090 819671 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.27 26.2 0.91 At3g52120 824376 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein F:RNA binding, nucleic acid binding;P:RNA processing;C:intracellular;MPFO O.I. H.G. S.X.
0.27 26.2 0.91 At3g06540 819832 GDP dissociation inhibitor family protein / Rab GTPase activator family protein F:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.27 26.2 0.90 At5g22770 832340 alpha-ADR (alpha-adaptin) F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFP O.I. H.G. S.X.
0.26 24.4 0.91 At5g14950 831347 GMII (GOLGI ALPHA-MANNOSIDASE II) Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans. O.I. H.G. S.X.
0.26 24.4 0.90 At5g41940 834199 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBVA O.I. H.G. S.X.
0.26 24.4 0.90 At4g12230 826831 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFV O.I. H.G. S.X.
0.24 20.7 0.91 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA O.I. H.G. S.X.
0.24 20.7 0.91 At1g68100 843138 IAR1 (IAA-ALANINE RESISTANT 1) member of IAA-alanine resistance protein 1 O.I. H.G. S.X.
0.24 20.7 0.91 At2g27600 817306 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. O.I. H.G. S.X.
0.23 19.3 0.90 At1g68070 843135 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB O.I. H.G. S.X.
0.23 19.3 0.91 At2g45140 819122 PVA12 (PLANT VAP HOMOLOG 12) Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. O.I. H.G. S.X.
0.23 19.3 0.90 At3g25800 822171 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) one of three genes encoding the protein phosphatase 2A regulatory subunit O.I. H.G. S.X.
0.23 19.3 0.90 At5g53530 835435 VPS26A (VACUOLAR PROTEIN SORTING 26A) Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.22 17.5 0.91 At4g23640 828464 TRH1 (TINY ROOT HAIR 1) Functions as a potassium transporter and is required for the establishment of root tip growth. O.I. H.G. S.X.
0.21 15.8 0.91 At3g03570 821234 - F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO O.I. H.G. S.X.
0.18 11.4 0.90 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. O.I. H.G. S.X.
0.18 11.4 0.91 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA O.I. H.G. S.X.
0.17 10.2 0.90 At2g43210 818922 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. H.G. S.X.
0.17 10.2 0.90 At1g12470 837804 Pep3/Vps18/deep orange family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB O.I. H.G. S.X.
0.15 7.8 0.91 At1g78920 844231 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) vacuolar-type H+-translocating inorganic pyrophosphatase O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.94	96.7	1.00	At5g43100	834326	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPFO	O.I.	H.G.	S.X.
0.50	65.3	0.90	At4g19670	827711	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB	O.I.	H.G.	S.X.
0.47	61.2	0.91	At1g21380	838737	VHS domain-containing protein / GAT domain-containing protein	F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB	O.I.	H.G.	S.X.
0.44	57.2	0.91	At5g19050	832024	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;FOBMPV	O.I.	H.G.	S.X.
0.41	52.4	0.91	At5g63910	836512	FCLY (FARNESYLCYSTEINE LYASE)	encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate.	O.I.	H.G.	S.X.
0.40	50.8	0.90	At2g21520	816691	transporter	F:transporter activity;P:transport;C:intracellular;MPFO	O.I.	H.G.	S.X.
0.39	48.4	0.90	At1g10720	837615	BSD domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVB	O.I.	H.G.	S.X.
0.39	48.4	0.90	At1g34190	840318	anac017 (Arabidopsis NAC domain containing protein 17)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POB	O.I.	H.G.	S.X.
0.38	46.7	0.90	At1g54115	841851	CCX4 (CATION CALCIUM EXCHANGER 4)	Involved in cation (Na and K) homeostasis.	O.I.	H.G.	S.X.
0.38	46.7	0.93	At5g55500	835643	XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)	Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.	O.I.	H.G.	S.X.
0.37	45.0	0.91	At1g22040	838809	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;MPBOVFA	O.I.	H.G.	S.X.
0.37	45.0	0.90	At4g13270	826957	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.36	43.6	0.91	At1g71190	843459	SAG18 (SENESCENCE ASSOCIATED GENE 18)	Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.	O.I.	H.G.	S.X.
0.36	43.6	0.90	At4g38360	829993	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	H.G.	S.X.
0.34	39.8	0.91	At1g69980	843335	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.34	39.8	0.91	At5g05700	830454	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)	Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.	O.I.	H.G.	S.X.
0.34	39.8	0.91	At3g51580	824321	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV	O.I.	H.G.	S.X.
0.34	39.8	0.91	At1g48790	841301	mov34 family protein	F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.34	39.8	0.91	At5g20990	832224	B73	Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.	O.I.	H.G.	S.X.
0.34	39.8	0.91	At5g02040	831904	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF	O.I.	H.G.	S.X.
0.34	39.8	0.90	At1g20110	838600	zinc finger (FYVE type) family protein	F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA	O.I.	H.G.	S.X.
0.33	38.1	0.90	At1g25280	839112	AtTLP10 (TUBBY LIKE PROTEIN 10)	Member of TLP family	O.I.	H.G.	S.X.
0.33	38.1	0.91	At2g17190	816224	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:unknown;MOPFBVA	O.I.	H.G.	S.X.
0.33	38.1	0.91	At2g36360	818209	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA	O.I.	H.G.	S.X.
0.33	38.1	0.90	At3g61790	825352	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF	O.I.	H.G.	S.X.
0.33	38.1	0.91	At4g40050	830168	signal transducer	F:signal transducer activity;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.32	35.7	0.90	At1g32230	840115	RCD1 (RADICAL-INDUCED CELL DEATH1)	Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.	O.I.	H.G.	S.X.
0.32	35.7	0.91	At3g59950	825165	autophagy 4b (APG4b)	F:peptidase activity;P:autophagy;C:chloroplast;MOFP	O.I.	H.G.	S.X.
0.32	35.7	0.90	At2g33630	817929	3-beta hydroxysteroid dehydrogenase/isomerase family protein	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPV	O.I.	H.G.	S.X.
0.32	35.7	0.90	At2g38020	818380	VCL1 (VACUOLELESS 1)	necessary for proper vacuole formation and morphogenesis in Arabidopsis	O.I.	H.G.	S.X.
0.31	33.8	0.91	At5g23520	832417	-	F:unknown;P:unknown;C:cytoplasm;FPMBO	O.I.	H.G.	S.X.
0.31	33.8	0.91	At2g01980	814729	SOS1 (SALT OVERLY SENSITIVE 1)	Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.	O.I.	H.G.	S.X.
0.31	33.8	0.90	At3g54840	824649	ARA6	Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.	O.I.	H.G.	S.X.
0.31	33.8	0.90	At3g19770	821514	VPS9A	Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.	O.I.	H.G.	S.X.
0.31	33.8	0.91	At4g33890	829532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	H.G.	S.X.
0.30	32.1	0.91	At1g09920	837524	TRAF-type zinc finger-related	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP	O.I.	H.G.	S.X.
0.30	32.1	0.90	At4g23460	828445	beta-adaptin, putative	F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MFOPBA	O.I.	H.G.	S.X.
0.30	32.1	0.90	At5g46860	834730	VAM3	Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164�220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.	O.I.	H.G.	S.X.
0.29	30.3	0.90	At2g39940	818581	COI1 (CORONATINE INSENSITIVE 1)	Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.	O.I.	H.G.	S.X.
0.29	30.3	0.90	At2g44100	819016	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	GDP dissociation inhibitor involved in vesicular membrane traffic	O.I.	H.G.	S.X.
0.29	30.3	0.90	At5g43320	834350	ckl8 (Casein Kinase I-like 8)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA	O.I.	H.G.	S.X.
0.29	30.3	0.90	At1g16180	838187	TMS membrane family protein / tumour differentially expressed (TDE) family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO	O.I.	H.G.	S.X.
0.28	30.3	0.90	At1g59580	842248	ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2)	encodes a mitogen-activated kinase involved in innate immunity	O.I.	H.G.	S.X.
0.28	30.3	0.90	At4g36630	829815	EMB2754 (EMBRYO DEFECTIVE 2754)	F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.28	30.3	0.91	At3g05090	819671	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV	O.I.	H.G.	S.X.
0.27	26.2	0.91	At3g52120	824376	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	F:RNA binding, nucleic acid binding;P:RNA processing;C:intracellular;MPFO	O.I.	H.G.	S.X.
0.27	26.2	0.91	At3g06540	819832	GDP dissociation inhibitor family protein / Rab GTPase activator family protein	F:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.27	26.2	0.90	At5g22770	832340	alpha-ADR (alpha-adaptin)	F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFP	O.I.	H.G.	S.X.
0.26	24.4	0.91	At5g14950	831347	GMII (GOLGI ALPHA-MANNOSIDASE II)	Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.	O.I.	H.G.	S.X.
0.26	24.4	0.90	At5g41940	834199	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPBVA	O.I.	H.G.	S.X.
0.26	24.4	0.90	At4g12230	826831	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFV	O.I.	H.G.	S.X.
0.24	20.7	0.91	At5g35980	833590	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA	O.I.	H.G.	S.X.
0.24	20.7	0.91	At1g68100	843138	IAR1 (IAA-ALANINE RESISTANT 1)	member of IAA-alanine resistance protein 1	O.I.	H.G.	S.X.
0.24	20.7	0.91	At2g27600	817306	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.	O.I.	H.G.	S.X.
0.23	19.3	0.90	At1g68070	843135	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB	O.I.	H.G.	S.X.
0.23	19.3	0.91	At2g45140	819122	PVA12 (PLANT VAP HOMOLOG 12)	Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	O.I.	H.G.	S.X.
0.23	19.3	0.90	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	O.I.	H.G.	S.X.
0.23	19.3	0.90	At5g53530	835435	VPS26A (VACUOLAR PROTEIN SORTING 26A)	Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	O.I.	H.G.	S.X.
0.22	17.5	0.91	At4g23640	828464	TRH1 (TINY ROOT HAIR 1)	Functions as a potassium transporter and is required for the establishment of root tip growth.	O.I.	H.G.	S.X.
0.21	15.8	0.91	At3g03570	821234	-	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO	O.I.	H.G.	S.X.
0.18	11.4	0.90	At3g59770	825146	SAC9	Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.	O.I.	H.G.	S.X.
0.18	11.4	0.91	At3g12100	820384	cation efflux family protein / metal tolerance protein, putative	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA	O.I.	H.G.	S.X.
0.17	10.2	0.90	At2g43210	818922	UBX domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	H.G.	S.X.
0.17	10.2	0.90	At1g12470	837804	Pep3/Vps18/deep orange family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB	O.I.	H.G.	S.X.
0.15	7.8	0.91	At1g78920	844231	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	vacuolar-type H+-translocating inorganic pyrophosphatase	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.3 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.0 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.1 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.6 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.5 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.6 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.5 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.2 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.7 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.1 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.7 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.4 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.5 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.5 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.4 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.9 99.6 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
19.7 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.9 99.5 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.2 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.2 99.4 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.5 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.3 99.3 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.5 99.1 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2 99.1 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.8 99.0 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
8.7 99.0 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
68.3	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
53.0	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
52.1	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.6	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.5	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.6	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.6	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.5	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.2	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.6	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.4	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.7	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.1	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.7	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.4	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.5	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.5	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.4	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.9	99.6	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
19.7	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.9	99.5	GSM266666	Arabidopsis, root cells, columella root cap, -Fe, replicate 1	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.2	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.2	99.4	GSM266667	Arabidopsis, root cells, columella root cap, -Fe, replicate 2	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.5	99.4	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.3	99.3	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.5	99.1	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2	99.1	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.8	99.0	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
8.7	99.0	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.055 2 GO:0007033 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.
0.054 6 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.051 2 GO:0006487 The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.

SF	Genes	GO ID	Process Name
0.055	2	GO:0007033	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole.
0.054	6	GO:0006886	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.051	2	GO:0006487	The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.046 3 04144 Endocytosis
0.042 2 00510 N-Glycan biosynthesis
0.025 1 04650 Natural killer cell mediated cytotoxicity

SF	Genes	KEGG ID	Pathway name
0.046	3	04144	Endocytosis
0.042	2	00510	N-Glycan biosynthesis
0.025	1	04650	Natural killer cell mediated cytotoxicity

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g43100
Gene name	aspartyl protease family protein
Module size	65 genes
NF	0.30
%ile	37.3

Co-expression analysis

Gene ID At5g43100 Gene name aspartyl protease family protein Module size 65 genes NF 0.30 %ile 37.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.046304144Endocytosis0.042200510N-Glycan biosynthesis0.025104650Natural killer cell mediated cytotoxicity

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g43100

Gene name aspartyl protease family protein

Module size 65 genes

NF 0.30

%ile 37.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.046 3 04144 Endocytosis
0.042 2 00510 N-Glycan biosynthesis
0.025 1 04650 Natural killer cell mediated cytotoxicity

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays