Co-expression analysis

Gene ID At5g42600
Gene name MRN1 (MARNERAL SYNTHASE)
Module size 10 genes
NF 0.75
%ile 92.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g42600834267MRN1 (MARNERAL SYNTHASE)Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.O.I.H.G.S.X.
0.8994.60.78At5g42580834265CYP705A12a member of the cytochrome P450 familyO.I.H.G.S.X.
0.8491.90.77At5g42590834266CYP71A16putative cytochrome P450O.I.H.G.S.X.
0.7586.90.65At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.H.G.S.X.
0.7586.90.75At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7083.50.66At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.H.G.S.X.
0.6781.60.73At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.O.I.H.G.S.X.
0.6781.60.71At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.O.I.H.G.S.X.
0.6478.90.70At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.H.G.S.X.
0.6378.10.65At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
278.5100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
178.7100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
127.799.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
123.699.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
96.699.9E-MEXP-509-raw-cel-829148348
92.299.9E-MEXP-509-raw-cel-829148456
77.999.9E-MEXP-509-raw-cel-829148561
62.099.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
56.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.599.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.699.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
45.899.8E-MEXP-509-raw-cel-829148129
45.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.299.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.899.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.599.7GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
30.199.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.799.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.799.7E-MEXP-509-raw-cel-829148201
23.799.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.599.6E-MEXP-509-raw-cel-829148420
23.499.6E-MEXP-509-raw-cel-829148525
22.399.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.999.6E-MEXP-509-raw-cel-829148313
20.699.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.999.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.399.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.299.5GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.199.5E-MEXP-509-raw-cel-829148597
16.299.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.399.4GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.099.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.899.2GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.599.2E-MEXP-509-raw-cel-829148632
10.199.2GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.4623GO:0080003The chemical reactions and pathways involving the triterpene thalianol.Link to AmiGO
0.2002GO:0019745The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.Link to AmiGO
0.1671GO:0010263The chemical reactions and pathways resulting in the formation of tricyclic triterpenoid compounds, terpenoids with 6 isoprene units and 3 carbon rings.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.056100100Steroid biosynthesisLink to KEGG PATHWAY
0.026100945Stilbenoid, diarylheptanoid and gingerol biosynthesisLink to KEGG PATHWAY
0.025100903Limonene and pinene degradationLink to KEGG PATHWAY

Inter-species module comparison

A co-expression module including the grape gene, 1608363_at, orthologous to the query gene, At5g42600

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8293.91608363_at-hypothetical protein LOC100247075-1e+0At2g15240UNC-50 family proteinO.I.H.G.S.X.
0.6888.01614557_s_at-hypothetical protein LOC100243157-3e-62At2g03120ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)O.I.H.G.S.X.
0.6787.91614321_at---1e+0At3g03220ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13)O.I.H.G.S.X.
0.5980.61615472_at-hypothetical LOC100243131-7e-11At1g48790mov34 family proteinO.I.H.G.S.X.
0.5779.81619982_at-hypothetical protein LOC100246310-4e-140At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.5679.41622831_at-hypothetical protein LOC100258499-4e+0At5g511104-alpha-hydroxytetrahydrobiopterin dehydrataseO.I.H.G.S.X.
0.5679.41613126_at-hypothetical protein LOC100232876-5e-35At5g41950bindingO.I.H.G.S.X.
0.5475.71620796_at-hypothetical LOC100245990-4e-5At3g24315AtSec20O.I.H.G.S.X.
0.5072.71620526_at-hypothetical protein LOC100261578-1e-104At1g54340ICDH (ISOCITRATE DEHYDROGENASE)O.I.H.G.S.X.
0.4969.31621240_at-hypothetical protein LOC100262992-3e-15At5g49060DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4767.71621953_s_at-hypothetical protein LOC100252245-3e-33At1g27970NTF2B (NUCLEAR TRANSPORT FACTOR 2B)O.I.H.G.S.X.
0.4767.71620640_s_at-hypothetical protein LOC100267834-9e-9At4g24590unknown proteinO.I.H.G.S.X.
0.4666.51613472_at-hypothetical protein LOC100249155-2e-10At3g27310PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)O.I.H.G.S.X.
0.4666.51618154_at-hypothetical protein LOC100258219-3e-44At4g2482026S proteasome regulatory subunit, putative (RPN7)O.I.H.G.S.X.
0.4361.51608478_at-hypothetical protein LOC100246825-2e-17At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4260.11619348_at---5e-8At1g79975-O.I.H.G.S.X.
0.4158.71610625_at-hypothetical protein LOC100259247-6e-30At4g08960phosphotyrosyl phosphatase activator (PTPA) family proteinO.I.H.G.S.X.
0.3751.71609821_at---5e-6At3g60250CKB3O.I.H.G.S.X.
0.3446.81617115_at-hypothetical protein LOC100261650-3e-63At1g34130STT3B (staurosporin and temperature sensitive 3-like b)O.I.H.G.S.X.
0.3446.81622114_at-hypothetical protein LOC100265981-6e-27At2g45200GOS12 (GOLGI SNARE 12)O.I.H.G.S.X.
0.3345.71616824_at-hypothetical protein LOC100255130-4e-5At3g16760tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2632.01612704_at-hypothetical protein LOC100262854-5e-66At2g20130LCV1 (LIKE COV 1)O.I.H.G.S.X.
0.2632.01613596_at-hypothetical protein LOC100261591-3e-29At1g32790RNA-binding protein, putativeO.I.H.G.S.X.
0.2632.01607154_at-hypothetical protein LOC100266477-6e-5At5g18420unknown proteinO.I.H.G.S.X.
0.2530.51617728_at-hypothetical protein LOC100247646-5e-20At1g31970STRS1 (STRESS RESPONSE SUPPRESSOR 1)O.I.H.G.S.X.
0.2327.51622560_at-hypothetical protein LOC100265315-3e-27At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)O.I.H.G.S.X.
0.2327.51611478_at-hypothetical protein LOC100263853-5e-63At1g56450PBG1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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