CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g42490

Gene name kinesin motor family protein

Module size 5 genes

NF 0.67

%ile 86.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.80 89.8 1.00 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA O.I. H.G. S.X.
0.67 81.6 0.99 At1g01460 839469 PIPK11 Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. O.I. H.G. S.X.
0.67 81.6 0.99 At1g01980 839296 ATSEC1A member of Reticuline oxidase-like family O.I. H.G. S.X.
0.60 75.7 0.99 At1g66210 842936 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFA O.I. H.G. S.X.
0.60 75.7 0.99 At2g28180 817364 ATCHX8 member of Putative Na+/H+ antiporter family O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.80	89.8	1.00	At5g42490	834256	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA	O.I.	H.G.	S.X.
0.67	81.6	0.99	At1g01460	839469	PIPK11	Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.	O.I.	H.G.	S.X.
0.67	81.6	0.99	At1g01980	839296	ATSEC1A	member of Reticuline oxidase-like family	O.I.	H.G.	S.X.
0.60	75.7	0.99	At1g66210	842936	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFA	O.I.	H.G.	S.X.
0.60	75.7	0.99	At2g28180	817364	ATCHX8	member of Putative Na+/H+ antiporter family	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.8 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.4 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.0 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.8 99.5 E-TABM-209-raw-cel-1316546519
15.8 99.5 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
14.0 99.4 GSM260883 Yap_A2-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
12.7 99.3 E-TABM-209-raw-cel-1316546455
11.1 99.2 GSM260882 Yap_A1-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
10.6 99.2 GSM134394 St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
10.1 99.2 GSM134430 St.Clair_1-55_269b_Kin-0_0.02%-silwet_Rep1_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
10.0 99.2 GSM134391 St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
9.9 99.1 GSM134413 St.Clair_1-110_375_Van-0_0.02%-silwet_Rep2_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
9.3 99.1 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.3 99.1 E-MEXP-1474-raw-cel-1593932673
9.3 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 E-TABM-209-raw-cel-1316546503
8.8 99.0 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
8.7 99.0 E-ATMX-6-raw-cel-1308219240
8.7 99.0 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.7 99.0 E-MEXP-1246-raw-cel-1504120171
8.6 99.0 E-MEXP-1474-raw-cel-1593932577
8.6 99.0 E-MEXP-1246-raw-cel-1504120261

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
28.8	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.4	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
21.0	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.8	99.5	E-TABM-209-raw-cel-1316546519
15.8	99.5	GSM184900	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
14.0	99.4	GSM260883	Yap_A2-AMF_Rep2	GSE10323	Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
12.7	99.3	E-TABM-209-raw-cel-1316546455
11.1	99.2	GSM260882	Yap_A1-AMF_Rep2	GSE10323	Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
10.6	99.2	GSM134394	St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
10.1	99.2	GSM134430	St.Clair_1-55_269b_Kin-0_0.02%-silwet_Rep1_ATH1	GSE5757	Expression Level Polymorphism Project (ELP) - Kin-0
10.0	99.2	GSM134391	St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1	GSE5754	Expression Level Polymorphism Project (ELP) - Est
9.9	99.1	GSM134413	St.Clair_1-110_375_Van-0_0.02%-silwet_Rep2_ATH1	GSE5756	Expression Level Polymorphism Project (ELP) - Van-0
9.3	99.1	GSM128654	Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.3	99.1	E-MEXP-1474-raw-cel-1593932673
9.3	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	E-TABM-209-raw-cel-1316546503
8.8	99.0	GSM10442	WT Ovule 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
8.7	99.0	E-ATMX-6-raw-cel-1308219240
8.7	99.0	GSM142755	MJ001_ATH1_A6-jones-RH-Rep3	GSE6165	The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
8.7	99.0	E-MEXP-1246-raw-cel-1504120171
8.6	99.0	E-MEXP-1474-raw-cel-1593932577
8.6	99.0	E-MEXP-1246-raw-cel-1504120261

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0046488 The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
0.038 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.
0.036 1 GO:0007018 Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.

SF	Genes	GO ID	Process Name
0.118	1	GO:0046488	The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
0.038	1	GO:0043086	Any process that stops or reduces the activity of an enzyme.
0.036	1	GO:0007018	Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.048 1 00562 Inositol phosphate metabolism
0.048 1 04070 Phosphatidylinositol signaling system
0.029 1 04144 Endocytosis

SF	Genes	KEGG ID	Pathway name
0.048	1	00562	Inositol phosphate metabolism
0.048	1	04070	Phosphatidylinositol signaling system
0.029	1	04144	Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g42490
Gene name	kinesin motor family protein
Module size	5 genes
NF	0.67
%ile	86.9

Co-expression analysis

Gene ID At5g42490 Gene name kinesin motor family protein Module size 5 genes NF 0.67 %ile 86.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.048100562Inositol phosphate metabolism0.048104070Phosphatidylinositol signaling system0.029104144Endocytosis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g42490

Gene name kinesin motor family protein

Module size 5 genes

NF 0.67

%ile 86.9

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.048 1 00562 Inositol phosphate metabolism
0.048 1 04070 Phosphatidylinositol signaling system
0.029 1 04144 Endocytosis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays