Co-expression analysis

Gene ID At5g42350
Gene name kelch repeat-containing F-box family protein
Module size 29 genes
NF 0.33
%ile 42.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9095.11.00At5g42350834241kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO.I.H.G.S.X.
0.4253.90.92At1g60780842372HAP13 (HAPLESS 13)F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.4253.90.92At4g34450829596coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPBO.I.H.G.S.X.
0.4152.40.93At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.4050.80.93At1g43690840956ubiquitin interaction motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.
0.3948.40.92At5g15880831445unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.3745.00.92At3g17430821007phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.3745.00.93At1g74800843819galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFBO.I.H.G.S.X.
0.3643.60.92At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.3541.60.92At3g63150825490MIRO2 (MIRO-RELATED GTP-ASE 2)Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response.O.I.H.G.S.X.
0.3541.60.92At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.
0.3541.60.93At3g26400822244EIF4B1member of eIF4B - eukaryotic initiation factor 4BO.I.H.G.S.X.
0.3338.10.92At2g47760819388ALG3F:alpha-1,3-mannosyltransferase activity, catalytic activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;MFOPABO.I.H.G.S.X.
0.3235.70.92At3g04470819603-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBVO.I.H.G.S.X.
0.3235.70.93At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFO.I.H.G.S.X.
0.3032.10.92At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFO.I.H.G.S.X.
0.2930.30.92At5g65950836725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2930.30.92At2g16920816195UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.2930.30.92At4g38200829976guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPBO.I.H.G.S.X.
0.2930.30.92At3g15410820780leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;MPBOFAVO.I.H.G.S.X.
0.2930.30.92At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.2830.30.92At4g38500830007unknown proteinF:unknown;P:unknown;C:Golgi apparatus;POBAO.I.H.G.S.X.
0.2830.30.93At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.2830.30.92At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.
0.2522.60.92At5g18580831976FASS (FASS 1)fass mutants have aberrant cell shapes due to defects in arrangement of cortical microtubules. Encodes a protein highly conserved in higher plants and similar in its C-terminal part to B' regulatory subunits of type 2A protein phosphatases. Interacts with an Arabidopsis type A subunit of PP2A in the yeast two-hybrid system.O.I.H.G.S.X.
0.2217.50.93At1g12470837804Pep3/Vps18/deep orange family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.2014.40.92At1g20575838646dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeF:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPVO.I.H.G.S.X.
0.1811.40.92At1g78800844216glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFO.I.H.G.S.X.
0.168.80.92At5g59160836034TOPP2Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.199.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
41.799.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
39.799.8GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
32.699.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
30.799.7GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
27.099.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.399.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.799.7E-MEXP-807-raw-cel-1173273196
25.699.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.299.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.699.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.999.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.799.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.399.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.099.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.099.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.999.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.999.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.899.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.199.6E-MEXP-807-raw-cel-1173273116
19.699.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.399.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.299.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.399.5E-MEXP-807-raw-cel-1173273170
17.999.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.899.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.199.5E-MEXP-807-raw-cel-1173273060
16.199.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.399.4GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.299.4E-MEXP-807-raw-cel-1173273088
14.999.4E-MEXP-1443-raw-cel-1581869515
14.599.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.399.4E-MEXP-807-raw-cel-1173273223
14.299.4GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.299.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.499.1GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
8.799.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
8.699.0GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.699.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0913GO:0006486The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.Link to AmiGO
0.0611GO:0032012Any process that modulates the frequency, rate or extent of ARF protein signal transduction.Link to AmiGO
0.0571GO:0007030A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.102300510N-Glycan biosynthesisLink to KEGG PATHWAY
0.016104120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.005301100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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