Co-expression analysis

Gene ID At5g41850
Gene name unknown protein
Module size 73 genes
NF 0.31
%ile 39.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g41850834190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFO.I.H.G.S.X.
0.5773.80.89At5g17250831589catalytic/ transferaseF:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBPO.I.H.G.S.X.
0.5570.60.88At2g35540818119DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAO.I.H.G.S.X.
0.5065.30.87At4g00590827968asparaginase 2 family proteinF:hydrolase activity;P:unknown;C:unknown;BOMFPAO.I.H.G.S.X.
0.4963.50.87At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.4761.20.87At3g01380821231catalytic/ transferaseF:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.
0.4659.80.85At3g44740823604ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide bindingF:glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation;C:endomembrane system, cytoplasm;OBMAFPO.I.H.G.S.X.
0.4659.80.88At2g27340817277-F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBPO.I.H.G.S.X.
0.4558.30.86At5g64970836621mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, plastid;MFPOO.I.H.G.S.X.
0.4457.20.85At5g17240831588SDG40 (SET DOMAIN GROUP 40)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.H.G.S.X.
0.4457.20.88At3g47390823893cytidine/deoxycytidylate deaminase family proteinF:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMVO.I.H.G.S.X.
0.4355.30.85At4g37630829917CYCD5core cell cycle genesO.I.H.G.S.X.
0.4253.90.86At3g63290825504unknown proteinF:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOBO.I.H.G.S.X.
0.4253.90.86At2g17270816233mitochondrial substrate carrier family proteinF:binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOO.I.H.G.S.X.
0.4253.90.87At1g01740839253protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVAO.I.H.G.S.X.
0.4152.40.87At3g03750821169SET domain-containing proteinF:zinc ion binding, histone-lysine N-methyltransferase activity;P:chromatin modification;C:nucleus;MPFOBO.I.H.G.S.X.
0.4050.80.87At5g04050830284-F:molecular_function unknown;P:RNA splicing;C:cellular_component unknown;BPOFMAO.I.H.G.S.X.
0.4050.80.88At1g21840838786UREF (urease accessory protein F)Encodes a urease accessory protein which is essential for the activation of plant urease.O.I.H.G.S.X.
0.4050.80.87At4g20060827751EMB1895 (EMBRYO DEFECTIVE 1895)F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.4050.80.86At5g47460834796pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.3948.40.88At2g31340817692emb1381 (embryo defective 1381)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.H.G.S.X.
0.3948.40.86At1g08960837416CAX11member of Potassium-dependent sodium-calcium exchanger like-familyO.I.H.G.S.X.
0.3846.70.87At4g31150829243endonuclease V family proteinF:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPFO.I.H.G.S.X.
0.3846.70.86At4g15950827277NRPD4Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologous to budding yeast RPB4O.I.H.G.S.X.
0.3846.70.87At2g39910818578bindingF:binding;P:biological_process unknown;C:unknown;MPO.I.H.G.S.X.
0.3846.70.86At4g16320--O.I.H.G.S.X.
0.3846.70.86At5g64950836619mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMOO.I.H.G.S.X.
0.3745.00.86At5g05310830413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.H.G.S.X.
0.3643.60.87At3g50430824207unknown proteinF:unknown;P:unknown;C:unknown;MPO.I.H.G.S.X.
0.3541.60.85At1g78010844136tRNA modification GTPase, putativeF:GTP binding, GTPase activity;P:small GTPase mediated signal transduction, tRNA modification;C:intracellular;BOMAFPO.I.H.G.S.X.
0.3439.80.87At3g60310825202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.80.87At3g18350821364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.10.86At1g73970843735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3338.10.86At3g21740821728APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4)ACCUMULATION OF PHOTOSYSTEM ONE 4O.I.H.G.S.X.
0.3235.70.87At5g06810830572mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3235.70.86At3g56830824850unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.3133.80.85At1g47720841183OSB1 (Organellar Single-stranded)Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination.O.I.H.G.S.X.
0.2930.30.86At1g57600842136membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:membrane;BOMFPO.I.H.G.S.X.
0.2930.30.87At1g02960839363unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.2930.30.86At4g18600827594WAVE5Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.O.I.H.G.S.X.
0.2930.30.86At5g19620832082OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA)AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75O.I.H.G.S.X.
0.2830.30.86At5g41580834160zinc ion bindingF:zinc ion binding;P:unknown;C:unknown;MOFPBVAO.I.H.G.S.X.
0.2726.20.86At2g31450817703endonuclease-relatedF:4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFPO.I.H.G.S.X.
0.2726.20.86At5g05920830477DHS (DEOXYHYPUSINE SYNTHASE)Encodes a deoxyhypusine synthase.O.I.H.G.S.X.
0.2726.20.87At1g33400840233tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAO.I.H.G.S.X.
0.2726.20.86At1g78690844205phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:unknown;BMOFPO.I.H.G.S.X.
0.2726.20.86At1g78810844217unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.2726.20.86At4g39920830151POR (PORCINO)Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.O.I.H.G.S.X.
0.2726.20.86At4g38170829973FRS9 (FAR1-related sequence 9)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.2624.40.86At1g26090839150unknown proteinF:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFPO.I.H.G.S.X.
0.2624.40.86At5g14620831315DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.O.I.H.G.S.X.
0.2624.40.85At3g26950822313unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2624.40.86At1g30970839984SUF4 (suppressor of FRIGIDA4)Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.O.I.H.G.S.X.
0.2624.40.86At1g74860843825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.2522.60.86At3g05040819666HST (HASTY)Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.O.I.H.G.S.X.
0.2522.60.86At3g52610824427unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.2522.60.86At5g41480834149GLA1 (GLOBULAR ARREST1)Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.O.I.H.G.S.X.
0.2522.60.87At1g73100843641SUVH3 (SU(VAR)3-9 HOMOLOG 3)Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.O.I.H.G.S.X.
0.2522.60.86At5g08010830695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAVO.I.H.G.S.X.
0.2420.70.86At1g18340838415basal transcription factor complex subunit-relatedF:general RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:core TFIIH complex;MFOPO.I.H.G.S.X.
0.2319.30.87At1g03000839315PEX6 (PEROXIN 6)Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.O.I.H.G.S.X.
0.2217.50.86At4g31200829247SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVAO.I.H.G.S.X.
0.2217.50.85At3g20620821609F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2115.80.86At4g17430827454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PFO.I.H.G.S.X.
0.2014.40.86At5g11380831009DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.O.I.H.G.S.X.
0.2014.40.86At1g19080838490TTN10 (TITAN 10)This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.O.I.H.G.S.X.
0.1912.70.86At3g19460821480reticulon family protein (RTNLB11)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.H.G.S.X.
0.1811.40.85At5g02410831764DIE2/ALG10 familyF:transferase activity, transferring hexosyl groups;P:biological_process unknown;C:endomembrane system, integral to membrane;FMOPO.I.H.G.S.X.
0.1710.20.86At1g79810844320TED3 (REVERSAL OF THE DET PHENOTYPE 3)Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.O.I.H.G.S.X.
0.168.80.86At4g10090826600unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.157.80.86At4g32560829391paramyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPVO.I.H.G.S.X.
0.124.90.86At1g26370839179RNA helicase, putativeF:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPAO.I.H.G.S.X.
0.103.40.86At2g22090816744UBP1 interacting protein 1a (UBA1a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
55.999.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.799.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.399.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.799.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.499.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.399.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.599.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.299.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.199.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.599.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.699.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.399.6GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
23.399.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.999.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.499.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.299.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.799.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.899.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.599.3GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.599.2GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.599.2GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
8.999.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0502GO:0016558The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported.Link to AmiGO
0.0452GO:0006506The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.Link to AmiGO
0.0402GO:0006635A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025100790Folate biosynthesisLink to KEGG PATHWAY
0.019100510N-Glycan biosynthesisLink to KEGG PATHWAY
0.019103022Basal transcription factorsLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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