Co-expression analysis

Gene ID At5g41340
Gene name UBC4 (UBIQUITIN CONJUGATING ENZYME 4)
Module size 78 genes
NF 0.31
%ile 39.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g41340834136UBC4 (UBIQUITIN CONJUGATING ENZYME 4)Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated.O.I.H.G.S.X.
0.5773.80.89At3g62560825430GTP-binding protein, putativeF:GTP binding;P:intracellular protein transport;C:endomembrane system, intracellular;MOFPBAO.I.H.G.S.X.
0.4963.50.89At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.4963.50.87At5g14680831320universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOFO.I.H.G.S.X.
0.4761.20.87At2g46030819211UBC6 (ubiquitin-conjugating enzyme 6)Ubiquitin conjugating enzyme E2O.I.H.G.S.X.
0.4761.20.89At1g06060837115RanBPM-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.4659.80.90At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.4558.30.88At3g60340825205palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFOO.I.H.G.S.X.
0.4355.30.88At2g29590817508thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.4355.30.88At4g14710827122acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingF:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.H.G.S.X.
0.4355.30.89At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.4355.30.89At3g13550820557FUS9 (FUSCA 9)Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark.O.I.H.G.S.X.
0.4253.90.89At3g29350822593AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.H.G.S.X.
0.4253.90.88At5g42190834224ASK2 (ARABIDOPSIS SKP1-LIKE 2)Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.O.I.H.G.S.X.
0.4253.90.89At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.4050.80.87At1g65720842883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4050.80.88At1g78890844226unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4050.80.87At5g19630832083unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAFO.I.H.G.S.X.
0.4050.80.89At4g17640827484CKB2Encodes casein kinase II beta (regulatory) subunit.O.I.H.G.S.X.
0.4050.80.88At3g10850820255GLY2glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, completeO.I.H.G.S.X.
0.4050.80.89At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.O.I.H.G.S.X.
0.3948.40.88At4g40040830165histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.3948.40.88At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.O.I.H.G.S.X.
0.3948.40.88At1g17730838349VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOAO.I.H.G.S.X.
0.3948.40.88At5g53530835435VPS26A (VACUOLAR PROTEIN SORTING 26A)Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.3948.40.87At4g12230826831esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFVO.I.H.G.S.X.
0.3948.40.87At5g65960836726unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.3846.70.87At1g08110837330lactoylglutathione lyase, putative / glyoxalase I, putativeF:calmodulin binding, lactoylglutathione lyase activity;P:response to cadmium ion, carbohydrate metabolic process;C:chloroplast;BOFPMAO.I.H.G.S.X.
0.3846.70.88At3g05840819753ATSK12encodes a SHAGGY-like kinase involved in meristem organization.O.I.H.G.S.X.
0.3745.00.88At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOO.I.H.G.S.X.
0.3745.00.88At3g54300824597ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.O.I.H.G.S.X.
0.3745.00.88At1g33780840269unknown proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen, chloroplast;BOPO.I.H.G.S.X.
0.3745.00.88At3g61180825290zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.3643.60.87At2g43430818944GLX2-1 (GLYOXALASE 2-1)glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclearO.I.H.G.S.X.
0.3541.60.88At3g55140824680pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:unknown;BPFOO.I.H.G.S.X.
0.3541.60.88At1g17280838300UBC34 (ubiquitin-conjugating enzyme 34)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.3439.80.87At3g52560824422UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.O.I.H.G.S.X.
0.3439.80.88At4g25770828682unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;FMPOBO.I.H.G.S.X.
0.3439.80.88At5g58060835918YKT61member of YKT6 Gene FamilyO.I.H.G.S.X.
0.3439.80.88At3g28710822502H+-transporting two-sector ATPase, putativeF:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPABO.I.H.G.S.X.
0.3338.10.87At3g46000823743ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)Encodes depolymerizing factor 2.O.I.H.G.S.X.
0.3235.70.88At3g58170824986BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ).O.I.H.G.S.X.
0.3235.70.87At3g55070824673-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOO.I.H.G.S.X.
0.3235.70.88At1g08970837417NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)heme activated protein (HAP5c)O.I.H.G.S.X.
0.3235.70.87At4g38090829965unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFPO.I.H.G.S.X.
0.3133.80.88At4g40030830164histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.3032.10.88At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.3032.10.89At2g19790816498clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MOFPO.I.H.G.S.X.
0.3032.10.89At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2930.30.88At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBO.I.H.G.S.X.
0.2930.30.88At5g58740835988nuclear movement family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.2726.20.87At3g62970825472protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFBO.I.H.G.S.X.
0.2726.20.88At1g02130837023ARA-5 (ARABIDOPSIS RAS 5)Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.O.I.H.G.S.X.
0.2726.20.87At1g31940840084unknown proteinF:unknown;P:unknown;C:plasma membrane;PO.I.H.G.S.X.
0.2726.20.87At5g47310834778unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2624.40.88At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOO.I.H.G.S.X.
0.2624.40.87At1g30910839975molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BMFOPAO.I.H.G.S.X.
0.2624.40.87At3g11200820290AL2 (ALFIN-LIKE 2)AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.2624.40.87At1g01230839331ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.2522.60.88At5g41210834123ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.2522.60.88At2g27600817306SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.O.I.H.G.S.X.
0.2420.70.87At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).O.I.H.G.S.X.
0.2420.70.88At4g37880829944protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2420.70.87At1g11930837744alanine racemase family proteinF:pyridoxal phosphate binding;P:biological_process unknown;C:cellular_component unknown;OBMFPAO.I.H.G.S.X.
0.2319.30.87At5g61500836271ATG3F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2217.50.88At5g06260830513nucleolar protein-relatedF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.2014.40.87At1g79975--O.I.H.G.S.X.
0.2014.40.88At1g19120838495small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOAO.I.H.G.S.X.
0.1912.70.88At1g02140837560MAGO (MAGO NASHI)F:protein binding;P:embryonic development ending in seed dormancy, pollen tube guidance, sex determination;C:in 6 components;MFOPO.I.H.G.S.X.
0.1811.40.87At2g23940816926unknown proteinF:unknown;P:unknown;C:plasma membrane;MFOPO.I.H.G.S.X.
0.1811.40.88At2g35320818099ATEYA (Arabidopsis thaliana EYES ABSENT homolog)homologue of the animal Eyes Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent.O.I.H.G.S.X.
0.1811.40.88At1g03150839562GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MBOFAPO.I.H.G.S.X.
0.1710.20.88At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.1710.20.88At4g33670829509L-galactose dehydrogenase (L-GalDH)Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesisO.I.H.G.S.X.
0.168.80.87At5g38470833835DNA repair protein RAD23, putativeF:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVAO.I.H.G.S.X.
0.168.80.87At4g32930829430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.157.80.88At2g42590818859GRF9 (GENERAL REGULATORY FACTOR 9)14-3-3 gene. Binds calcium and displays induced structural changes.O.I.H.G.S.X.
0.124.90.88At1g54390841881PHD finger protein-relatedING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.699.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
61.699.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
57.999.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
57.899.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
41.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.399.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.399.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.199.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.399.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
33.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.599.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.299.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.999.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.299.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.299.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.899.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.099.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.899.5GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
17.699.5GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
16.699.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.699.4GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.399.2GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.799.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.399.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.199.1GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.199.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0482GO:0019243The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step.Link to AmiGO
0.0412GO:0006623The process of directing proteins towards the vacuole, usually using signals contained within the protein.Link to AmiGO
0.0414GO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.056504120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.048304130SNARE interactions in vesicular transportLink to KEGG PATHWAY
0.042304144EndocytosisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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