CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g40550

Gene name unknown protein

Module size 83 genes

NF 0.29

%ile 35.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At5g40550 834053 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.47 61.2 0.90 At3g18910 821424 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.45 58.3 0.89 At2g39090 818495 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP O.I. H.G. S.X.
0.44 57.2 0.91 At3g60740 825245 TTN1 (TITAN 1) Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. O.I. H.G. S.X.
0.44 57.2 0.89 At2g27340 817277 - F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBP O.I. H.G. S.X.
0.43 55.3 0.90 At2g18850 816400 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. H.G. S.X.
0.41 52.4 0.88 At2g36740 818246 SWC2 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;OMFBPVA O.I. H.G. S.X.
0.40 50.8 0.89 At1g33400 840233 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFA O.I. H.G. S.X.
0.40 50.8 0.89 At1g48380 841258 RHL1 (ROOT HAIRLESS 1) Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A. O.I. H.G. S.X.
0.40 50.8 0.90 At3g62620 825436 sucrose-phosphatase-related F:unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. H.G. S.X.
0.39 48.4 0.89 At3g20070 821546 TTN9 (TITAN9) Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information. O.I. H.G. S.X.
0.39 48.4 0.89 At4g31200 829247 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVA O.I. H.G. S.X.
0.38 46.7 0.89 At1g19080 838490 TTN10 (TITAN 10) This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development. O.I. H.G. S.X.
0.38 46.7 0.90 At1g73720 843707 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV O.I. H.G. S.X.
0.37 45.0 0.89 At5g14620 831315 DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues. O.I. H.G. S.X.
0.37 45.0 0.89 At3g57170 824884 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein F:transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity;P:GPI anchor biosynthetic process;C:endomembrane system, integral to membrane;MFOP O.I. H.G. S.X.
0.37 45.0 0.88 At3g56830 824850 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. H.G. S.X.
0.36 43.6 0.89 At2g22530 816786 catalytic/ transferase F:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPA O.I. H.G. S.X.
0.36 43.6 0.90 At5g43710 834391 glycoside hydrolase family 47 protein F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:endomembrane system, membrane;MFOPB O.I. H.G. S.X.
0.36 43.6 0.90 At4g10090 826600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.36 43.6 0.89 At3g17450 821009 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB O.I. H.G. S.X.
0.35 41.6 0.89 At4g31010 829228 RNA binding F:RNA binding;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.35 41.6 0.89 At2g39910 818578 binding F:binding;P:biological_process unknown;C:unknown;MP O.I. H.G. S.X.
0.35 41.6 0.89 At2g05210 815069 AtPOT1a (Protection of Telomeres 1a) Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b. O.I. H.G. S.X.
0.35 41.6 0.89 At3g49250 824086 DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation. O.I. H.G. S.X.
0.34 39.8 0.89 At4g23840 828483 leucine-rich repeat family protein F:protein binding;P:unknown;C:cellular_component unknown;BMPOFVA O.I. H.G. S.X.
0.34 39.8 0.89 At3g13222 820513 GIP1 (GBF-INTERACTING PROTEIN 1) Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. O.I. H.G. S.X.
0.34 39.8 0.90 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.34 39.8 0.89 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA O.I. H.G. S.X.
0.34 39.8 0.89 At4g24500 828552 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV O.I. H.G. S.X.
0.34 39.8 0.89 At4g39170 830072 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO O.I. H.G. S.X.
0.34 39.8 0.89 At1g17930 838372 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.32 35.7 0.90 At1g29550 839832 eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOPF O.I. H.G. S.X.
0.32 35.7 0.90 At1g08750 837397 GPI-anchor transamidase, putative F:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFAB O.I. H.G. S.X.
0.32 35.7 0.90 At4g32560 829391 paramyosin-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPV O.I. H.G. S.X.
0.30 32.1 0.89 At4g20400 827788 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO O.I. H.G. S.X.
0.30 32.1 0.88 At5g17410 831607 tubulin family protein F:unknown;P:microtubule cytoskeleton organization;C:spindle pole, microtubule organizing center;MFOP O.I. H.G. S.X.
0.30 32.1 0.89 At1g71310 843472 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POB O.I. H.G. S.X.
0.29 30.3 0.89 At1g26370 839179 RNA helicase, putative F:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPA O.I. H.G. S.X.
0.29 30.3 0.89 At2g30800 817631 HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family. O.I. H.G. S.X.
0.29 30.3 0.88 At5g27710 832833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.28 30.3 0.88 At1g56350 842089 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV O.I. H.G. S.X.
0.28 30.3 0.89 At1g74860 843825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV O.I. H.G. S.X.
0.28 30.3 0.89 At4g10180 826609 DET1 (DE-ETIOLATED 1) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. O.I. H.G. S.X.
0.28 30.3 0.89 At2g22260 816759 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;BOFMPV O.I. H.G. S.X.
0.28 30.3 0.89 At3g43700 823478 ATBPM6 (BTB-POZ and MATH domain 6) F:protein binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.28 30.3 0.89 At1g21710 838775 OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme. O.I. H.G. S.X.
0.27 26.2 0.89 At4g09340 826516 SPla/RYanodine receptor (SPRY) domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.27 26.2 0.89 At1g54850 841924 - F:molecular_function unknown;P:biological_process unknown;C:nucleolus;PB O.I. H.G. S.X.
0.27 26.2 0.88 At4g24880 828590 unknown protein F:unknown;P:unknown;C:unknown;MPOF O.I. H.G. S.X.
0.27 26.2 0.89 At4g32620 829397 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB O.I. H.G. S.X.
0.26 24.4 0.89 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV O.I. H.G. S.X.
0.26 24.4 0.89 At4g34840 829636 ATMTN2 F:methylthioadenosine nucleosidase activity;P:nucleoside metabolic process;C:cellular_component unknown;BPO O.I. H.G. S.X.
0.26 24.4 0.89 At5g55390 835632 EDM2 Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. O.I. H.G. S.X.
0.25 22.6 0.89 At1g16900 838261 sugar binding / transferase, transferring glycosyl groups curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein O.I. H.G. S.X.
0.25 22.6 0.89 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.25 22.6 0.88 At3g16230 820869 RNA binding / catalytic F:RNA binding, catalytic activity;P:RNA metabolic process, regulation of transcription;C:mitochondrion;MPOF O.I. H.G. S.X.
0.25 22.6 0.90 At2g35630 818131 MOR1 (MICROTUBULE ORGANIZATION 1) Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. O.I. H.G. S.X.
0.25 22.6 0.89 At5g41480 834149 GLA1 (GLOBULAR ARREST1) Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis. O.I. H.G. S.X.
0.24 20.7 0.89 At5g64830 836606 programmed cell death 2 C-terminal domain-containing protein F:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOP O.I. H.G. S.X.
0.23 19.3 0.88 At1g06960 837206 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFOPBV O.I. H.G. S.X.
0.23 19.3 0.90 At1g55130 841956 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFB O.I. H.G. S.X.
0.23 19.3 0.89 At1g77470 844083 replication factor C 36 kDA, putative F:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPV O.I. H.G. S.X.
0.23 19.3 0.89 At5g08120 830707 MBP2C (MICROTUBULE BINDING PROTEIN 2C) Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections. O.I. H.G. S.X.
0.23 19.3 0.89 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.23 19.3 0.89 At4g39240 830080 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVF O.I. H.G. S.X.
0.23 19.3 0.89 At5g63440 836463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.22 17.5 0.89 At1g74800 843819 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB O.I. H.G. S.X.
0.22 17.5 0.89 At5g64610 836582 HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1) Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5. O.I. H.G. S.X.
0.21 15.8 0.90 At2g30910 817641 ARPC1A (ACTIN-RELATED PROTEIN C1A) F:actin binding, nucleotide binding;P:actin filament organization;C:Arp2/3 protein complex, nucleus, cytoplasm;MBFOPA O.I. H.G. S.X.
0.20 14.4 0.88 At5g09740 830834 HAM2 (histone acetyltransferase of the MYST family 2) Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2. O.I. H.G. S.X.
0.20 14.4 0.89 At3g22990 821873 LFR (LEAF AND FLOWER RELATED) Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues. O.I. H.G. S.X.
0.20 14.4 0.89 At1g35470 840440 SPla/RYanodine receptor (SPRY) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.20 14.4 0.89 At2g46470 819256 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) F:molecular_function unknown;P:protein import into mitochondrial inner membrane;C:mitochondrion, membrane;BOMFP O.I. H.G. S.X.
0.20 14.4 0.89 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. H.G. S.X.
0.20 14.4 0.89 At5g41760 834180 nucleotide-sugar transporter family protein F:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPF O.I. H.G. S.X.
0.19 12.7 0.89 At5g46190 834661 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB O.I. H.G. S.X.
0.18 11.4 0.89 At2g26200 817160 - F:unknown;P:unknown;C:unknown;MOBFPA O.I. H.G. S.X.
0.18 11.4 0.89 At2g35100 818076 ARAD1 (ARABINAN DEFICIENT 1) Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. O.I. H.G. S.X.
0.17 10.2 0.89 At3g49850 824147 TRB3 (TELOMERE REPEAT BINDING FACTOR 3) Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. O.I. H.G. S.X.
0.16 8.8 0.89 At3g61690 825342 unknown protein F:unknown;P:unknown;C:unknown;OMPFB O.I. H.G. S.X.
0.14 6.8 0.89 At1g78800 844216 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF O.I. H.G. S.X.
0.13 5.8 0.89 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At5g40550	834053	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.47	61.2	0.90	At3g18910	821424	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.45	58.3	0.89	At2g39090	818495	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP	O.I.	H.G.	S.X.
0.44	57.2	0.91	At3g60740	825245	TTN1 (TITAN 1)	Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.	O.I.	H.G.	S.X.
0.44	57.2	0.89	At2g27340	817277	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBP	O.I.	H.G.	S.X.
0.43	55.3	0.90	At2g18850	816400	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	H.G.	S.X.
0.41	52.4	0.88	At2g36740	818246	SWC2	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;OMFBPVA	O.I.	H.G.	S.X.
0.40	50.8	0.89	At1g33400	840233	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MOPBFA	O.I.	H.G.	S.X.
0.40	50.8	0.89	At1g48380	841258	RHL1 (ROOT HAIRLESS 1)	Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.	O.I.	H.G.	S.X.
0.40	50.8	0.90	At3g62620	825436	sucrose-phosphatase-related	F:unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	H.G.	S.X.
0.39	48.4	0.89	At3g20070	821546	TTN9 (TITAN9)	Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	O.I.	H.G.	S.X.
0.39	48.4	0.89	At4g31200	829247	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVA	O.I.	H.G.	S.X.
0.38	46.7	0.89	At1g19080	838490	TTN10 (TITAN 10)	This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.	O.I.	H.G.	S.X.
0.38	46.7	0.90	At1g73720	843707	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAV	O.I.	H.G.	S.X.
0.37	45.0	0.89	At5g14620	831315	DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)	A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.	O.I.	H.G.	S.X.
0.37	45.0	0.89	At3g57170	824884	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein	F:transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity;P:GPI anchor biosynthetic process;C:endomembrane system, integral to membrane;MFOP	O.I.	H.G.	S.X.
0.37	45.0	0.88	At3g56830	824850	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	H.G.	S.X.
0.36	43.6	0.89	At2g22530	816786	catalytic/ transferase	F:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPA	O.I.	H.G.	S.X.
0.36	43.6	0.90	At5g43710	834391	glycoside hydrolase family 47 protein	F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:endomembrane system, membrane;MFOPB	O.I.	H.G.	S.X.
0.36	43.6	0.90	At4g10090	826600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.36	43.6	0.89	At3g17450	821009	hAT dimerisation domain-containing protein	F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB	O.I.	H.G.	S.X.
0.35	41.6	0.89	At4g31010	829228	RNA binding	F:RNA binding;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.35	41.6	0.89	At2g39910	818578	binding	F:binding;P:biological_process unknown;C:unknown;MP	O.I.	H.G.	S.X.
0.35	41.6	0.89	At2g05210	815069	AtPOT1a (Protection of Telomeres 1a)	Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.	O.I.	H.G.	S.X.
0.35	41.6	0.89	At3g49250	824086	DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)	Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.	O.I.	H.G.	S.X.
0.34	39.8	0.89	At4g23840	828483	leucine-rich repeat family protein	F:protein binding;P:unknown;C:cellular_component unknown;BMPOFVA	O.I.	H.G.	S.X.
0.34	39.8	0.89	At3g13222	820513	GIP1 (GBF-INTERACTING PROTEIN 1)	Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.	O.I.	H.G.	S.X.
0.34	39.8	0.90	At4g14920	827150	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.34	39.8	0.89	At2g30280	817578	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA	O.I.	H.G.	S.X.
0.34	39.8	0.89	At4g24500	828552	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV	O.I.	H.G.	S.X.
0.34	39.8	0.89	At4g39170	830072	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO	O.I.	H.G.	S.X.
0.34	39.8	0.89	At1g17930	838372	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.32	35.7	0.90	At1g29550	839832	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOPF	O.I.	H.G.	S.X.
0.32	35.7	0.90	At1g08750	837397	GPI-anchor transamidase, putative	F:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFAB	O.I.	H.G.	S.X.
0.32	35.7	0.90	At4g32560	829391	paramyosin-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPV	O.I.	H.G.	S.X.
0.30	32.1	0.89	At4g20400	827788	transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO	O.I.	H.G.	S.X.
0.30	32.1	0.88	At5g17410	831607	tubulin family protein	F:unknown;P:microtubule cytoskeleton organization;C:spindle pole, microtubule organizing center;MFOP	O.I.	H.G.	S.X.
0.30	32.1	0.89	At1g71310	843472	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;POB	O.I.	H.G.	S.X.
0.29	30.3	0.89	At1g26370	839179	RNA helicase, putative	F:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPA	O.I.	H.G.	S.X.
0.29	30.3	0.89	At2g30800	817631	HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)	Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.	O.I.	H.G.	S.X.
0.29	30.3	0.88	At5g27710	832833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.28	30.3	0.88	At1g56350	842089	peptide chain release factor, putative	F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV	O.I.	H.G.	S.X.
0.28	30.3	0.89	At1g74860	843825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV	O.I.	H.G.	S.X.
0.28	30.3	0.89	At4g10180	826609	DET1 (DE-ETIOLATED 1)	Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.	O.I.	H.G.	S.X.
0.28	30.3	0.89	At2g22260	816759	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;BOFMPV	O.I.	H.G.	S.X.
0.28	30.3	0.89	At3g43700	823478	ATBPM6 (BTB-POZ and MATH domain 6)	F:protein binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.28	30.3	0.89	At1g21710	838775	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.	O.I.	H.G.	S.X.
0.27	26.2	0.89	At4g09340	826516	SPla/RYanodine receptor (SPRY) domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.27	26.2	0.89	At1g54850	841924	-	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;PB	O.I.	H.G.	S.X.
0.27	26.2	0.88	At4g24880	828590	unknown protein	F:unknown;P:unknown;C:unknown;MPOF	O.I.	H.G.	S.X.
0.27	26.2	0.89	At4g32620	829397	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OPMFB	O.I.	H.G.	S.X.
0.26	24.4	0.89	At1g61010	842393	CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)	F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV	O.I.	H.G.	S.X.
0.26	24.4	0.89	At4g34840	829636	ATMTN2	F:methylthioadenosine nucleosidase activity;P:nucleoside metabolic process;C:cellular_component unknown;BPO	O.I.	H.G.	S.X.
0.26	24.4	0.89	At5g55390	835632	EDM2	Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.	O.I.	H.G.	S.X.
0.25	22.6	0.89	At1g16900	838261	sugar binding / transferase, transferring glycosyl groups	curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein	O.I.	H.G.	S.X.
0.25	22.6	0.89	At3g15120	820743	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.25	22.6	0.88	At3g16230	820869	RNA binding / catalytic	F:RNA binding, catalytic activity;P:RNA metabolic process, regulation of transcription;C:mitochondrion;MPOF	O.I.	H.G.	S.X.
0.25	22.6	0.90	At2g35630	818131	MOR1 (MICROTUBULE ORGANIZATION 1)	Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.	O.I.	H.G.	S.X.
0.25	22.6	0.89	At5g41480	834149	GLA1 (GLOBULAR ARREST1)	Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.	O.I.	H.G.	S.X.
0.24	20.7	0.89	At5g64830	836606	programmed cell death 2 C-terminal domain-containing protein	F:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOP	O.I.	H.G.	S.X.
0.23	19.3	0.88	At1g06960	837206	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFOPBV	O.I.	H.G.	S.X.
0.23	19.3	0.90	At1g55130	841956	endomembrane protein 70, putative	F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFB	O.I.	H.G.	S.X.
0.23	19.3	0.89	At1g77470	844083	replication factor C 36 kDA, putative	F:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPV	O.I.	H.G.	S.X.
0.23	19.3	0.89	At5g08120	830707	MBP2C (MICROTUBULE BINDING PROTEIN 2C)	Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections.	O.I.	H.G.	S.X.
0.23	19.3	0.89	At3g23900	821973	RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.23	19.3	0.89	At4g39240	830080	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVF	O.I.	H.G.	S.X.
0.23	19.3	0.89	At5g63440	836463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.22	17.5	0.89	At1g74800	843819	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB	O.I.	H.G.	S.X.
0.22	17.5	0.89	At5g64610	836582	HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1)	Encodes an enzyme with histone acetyltransferase activity. HAM1 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM1. HAM1 acetylates histone H4 lysine 5.	O.I.	H.G.	S.X.
0.21	15.8	0.90	At2g30910	817641	ARPC1A (ACTIN-RELATED PROTEIN C1A)	F:actin binding, nucleotide binding;P:actin filament organization;C:Arp2/3 protein complex, nucleus, cytoplasm;MBFOPA	O.I.	H.G.	S.X.
0.20	14.4	0.88	At5g09740	830834	HAM2 (histone acetyltransferase of the MYST family 2)	Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.	O.I.	H.G.	S.X.
0.20	14.4	0.89	At3g22990	821873	LFR (LEAF AND FLOWER RELATED)	Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.	O.I.	H.G.	S.X.
0.20	14.4	0.89	At1g35470	840440	SPla/RYanodine receptor (SPRY) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.20	14.4	0.89	At2g46470	819256	OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)	F:molecular_function unknown;P:protein import into mitochondrial inner membrane;C:mitochondrion, membrane;BOMFP	O.I.	H.G.	S.X.
0.20	14.4	0.89	At5g27970	832867	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	H.G.	S.X.
0.20	14.4	0.89	At5g41760	834180	nucleotide-sugar transporter family protein	F:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPF	O.I.	H.G.	S.X.
0.19	12.7	0.89	At5g46190	834661	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB	O.I.	H.G.	S.X.
0.18	11.4	0.89	At2g26200	817160	-	F:unknown;P:unknown;C:unknown;MOBFPA	O.I.	H.G.	S.X.
0.18	11.4	0.89	At2g35100	818076	ARAD1 (ARABINAN DEFICIENT 1)	Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.	O.I.	H.G.	S.X.
0.17	10.2	0.89	At3g49850	824147	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.	O.I.	H.G.	S.X.
0.16	8.8	0.89	At3g61690	825342	unknown protein	F:unknown;P:unknown;C:unknown;OMPFB	O.I.	H.G.	S.X.
0.14	6.8	0.89	At1g78800	844216	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF	O.I.	H.G.	S.X.
0.13	5.8	0.89	At3g12100	820384	cation efflux family protein / metal tolerance protein, putative	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
43.9 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.2 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.1 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.4 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.1 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.8 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.0 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.9 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.6 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.5 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.0 99.7 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
29.9 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6 99.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
24.4 99.6 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
24.3 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.5 99.6 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.2 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.1 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.9 99.5 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.5 99.5 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.8 99.5 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
15.1 99.4 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.1 99.4 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
13.3 99.4 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
13.2 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.3 99.3 E-MEXP-1474-raw-cel-1593932513
11.9 99.3 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
10.2 99.2 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
10.1 99.2 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
9.9 99.1 E-MEXP-1474-raw-cel-1593932609
9.8 99.1 E-MEXP-807-raw-cel-1173273196
9.6 99.1 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.0 99.1 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
47.2	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
43.9	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
43.2	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.6	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.5	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.3	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.2	99.8	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.1	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.4	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
37.1	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.8	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
36.0	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.9	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.6	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.5	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.0	99.7	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
29.9	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6	99.7	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
24.4	99.6	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
24.3	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.5	99.6	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.2	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.1	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.9	99.5	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
18.5	99.5	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
17.8	99.5	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
15.1	99.4	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.1	99.4	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
13.3	99.4	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
13.2	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.3	99.3	E-MEXP-1474-raw-cel-1593932513
11.9	99.3	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
10.2	99.2	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
10.1	99.2	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
9.9	99.1	E-MEXP-1474-raw-cel-1593932609
9.8	99.1	E-MEXP-807-raw-cel-1173273196
9.6	99.1	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.0	99.1	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.041 2 GO:0006506 The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.
0.040 2 GO:0006333 The formation or destruction of chromatin structures.
0.040 2 GO:0000226 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.

SF	Genes	GO ID	Process Name
0.041	2	GO:0006506	The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol moiety is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate moiety, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage.
0.040	2	GO:0006333	The formation or destruction of chromatin structures.
0.040	2	GO:0000226	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.035 2 00510 N-Glycan biosynthesis
0.022 1 00790 Folate biosynthesis
0.018 1 03060 Protein export

SF	Genes	KEGG ID	Pathway name
0.035	2	00510	N-Glycan biosynthesis
0.022	1	00790	Folate biosynthesis
0.018	1	03060	Protein export

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g40550
Gene name	unknown protein
Module size	83 genes
NF	0.29
%ile	35.5

Co-expression analysis

Gene ID At5g40550 Gene name unknown protein Module size 83 genes NF 0.29 %ile 35.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.035200510N-Glycan biosynthesis0.022100790Folate biosynthesis0.018103060Protein export

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g40550

Gene name unknown protein

Module size 83 genes

NF 0.29

%ile 35.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.035 2 00510 N-Glycan biosynthesis
0.022 1 00790 Folate biosynthesis
0.018 1 03060 Protein export

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays