Co-expression analysis

Gene ID At5g39850
Gene name 40S ribosomal protein S9 (RPS9C)
Module size 97 genes
NF 0.23
%ile 23.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g3985083398140S ribosomal protein S9 (RPS9C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFAO.I.H.G.S.X.
0.5166.30.84At5g38890833880exoribonuclease-relatedF:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOPO.I.H.G.S.X.
0.4862.50.85At2g20940816628unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFOO.I.H.G.S.X.
0.4761.20.83At4g20020827747unknown proteinF:unknown;P:unknown;C:unknown;MBOPFVAO.I.H.G.S.X.
0.4659.80.81At1g15420838113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.
0.4558.30.79At3g49320824094-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPO.I.H.G.S.X.
0.4457.20.83At1g63780842682IMP4Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.O.I.H.G.S.X.
0.4253.90.81At5g18920832010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.4152.40.80At2g45280819136ATRAD51CEncodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.O.I.H.G.S.X.
0.3948.40.82At2g4486081909560S ribosomal protein L24, putativeF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPBO.I.H.G.S.X.
0.3846.70.81At2g39795818565mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMBO.I.H.G.S.X.
0.3541.60.83At1g14300837991bindingF:binding;P:biological_process unknown;C:cellular_component unknown;FMPOO.I.H.G.S.X.
0.3541.60.81At2g03820814908nonsense-mediated mRNA decay NMD3 family proteinF:molecular_function unknown;P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.3541.60.83At5g64680836589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOPFO.I.H.G.S.X.
0.3541.60.81At4g01560828136MEE49 (maternal effect embryo arrest 49)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPAO.I.H.G.S.X.
0.3439.80.80At1g04940839374TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.O.I.H.G.S.X.
0.3439.80.81At1g50920841514GTP-binding protein-relatedF:GTP binding, nucleotide binding;P:unknown;C:membrane;BOMFAPO.I.H.G.S.X.
0.3338.10.79At1g75670843901DNA-directed RNA polymerase/ RNA bindingF:DNA-directed RNA polymerase activity, RNA binding;P:transcription;C:cellular_component unknown;POFO.I.H.G.S.X.
0.3338.10.80At2g44510819058p21Cip1-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOPO.I.H.G.S.X.
0.3338.10.80At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.H.G.S.X.
0.3338.10.79At1g60850842377ATRPAC42F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAPO.I.H.G.S.X.
0.3235.70.81At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3133.80.84At1g49400841363emb1129 (embryo defective 1129)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOAPFMO.I.H.G.S.X.
0.3032.10.79At3g22310821800PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1)Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.O.I.H.G.S.X.
0.3032.10.81At2g45240819132MAP1A (METHIONINE AMINOPEPTIDASE 1A)Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.O.I.H.G.S.X.
0.3032.10.81At1g71260843467ATWHY2 (A. THALIANA WHIRLY 2)Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus.O.I.H.G.S.X.
0.3032.10.83At3g462108237663' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;BOMAFPO.I.H.G.S.X.
0.2930.30.80At1g42440840848-F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPVO.I.H.G.S.X.
0.2930.30.82At2g44270819035ATP bindingF:ATP binding;P:tRNA processing;C:unknown;BOAMFPO.I.H.G.S.X.
0.2930.30.79At1g51510841576Y14This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.O.I.H.G.S.X.
0.2930.30.79At5g53400835421nuclear movement family proteinF:unknown;P:unknown;C:cellular_component unknown;OMFBPAVO.I.H.G.S.X.
0.2930.30.80At5g22650832328HD2B (HISTONE DEACETYLASE 2B)Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.O.I.H.G.S.X.
0.2930.30.80At5g25780832647EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2)member of eIF3b - eukaryotic initiation factor 3bO.I.H.G.S.X.
0.2930.30.79At1g76300843963SmD3 (snRNP core protein SmD3)F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPO.I.H.G.S.X.
0.2830.30.82At1g74560843797NRP1 (NAP1-RELATED PROTEIN 1)Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.O.I.H.G.S.X.
0.2830.30.79At2g45440819152DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.O.I.H.G.S.X.
0.2830.30.82At5g15810831438N2,N2-dimethylguanosine tRNA methyltransferase family proteinF:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBPO.I.H.G.S.X.
0.2830.30.79At5g62290836350nucleotide-sensitive chloride conductance regulator (ICln) family proteinF:ion channel activity;P:cell volume homeostasis, chloride transport;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2726.20.79At1g8075084441460S ribosomal protein L7 (RPL7A)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit;MOFPAO.I.H.G.S.X.
0.2726.20.80At4g27380828846unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.2726.20.80At5g67630836899DNA helicase, putativeF:DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:nucleolus, chloroplast;BMOFPAO.I.H.G.S.X.
0.2726.20.79At1g55900842040TIM50component of a translocase in the mitochondrial inner membraneO.I.H.G.S.X.
0.2726.20.80At3g57660824935NRPA1Encodes a subunit of RNA polymerase I (aka RNA polymerase A).O.I.H.G.S.X.
0.2624.40.79At3g44750823605HDA3 (HISTONE DEACETYLASE 3)Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.O.I.H.G.S.X.
0.2624.40.79At2g31060817658elongation factor family proteinF:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:intracellular;BOMPFAO.I.H.G.S.X.
0.2522.60.79At1g06380837149ribosomal protein-relatedF:RNA binding;P:RNA processing;C:chloroplast, chloroplast envelope;MFPOAO.I.H.G.S.X.
0.2522.60.80At1g18800838462NRP2 (NAP1-RELATED PROTEIN 2)Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.O.I.H.G.S.X.
0.2522.60.80At3g22300821799RPS10 (RIBOSOMAL PROTEIN S10)Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10O.I.H.G.S.X.
0.2522.60.80At2g19540816473transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAO.I.H.G.S.X.
0.2522.60.79At5g40200834018DegP9 (DegP protease 9)Encodes a putative DegP protease.O.I.H.G.S.X.
0.2420.70.79At1g27390839629TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteinsO.I.H.G.S.X.
0.2420.70.80At1g64350842741SEH1Hseh1-like proteinO.I.H.G.S.X.
0.2420.70.80At3g56070824773ROC2 (ROTAMASE CYCLOPHILIN 2)rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.O.I.H.G.S.X.
0.2319.30.78At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2319.30.80At4g32520829387SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3)F:pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity;P:glycine metabolic process, L-serine metabolic process;C:chloroplast;OBMPFAVO.I.H.G.S.X.
0.2319.30.79At5g61020836223ECT3F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.2319.30.79At5g62190836340PRH75DEAD/DEAH box RNA helicase PRH75O.I.H.G.S.X.
0.2217.50.79At1g33390840232helicase domain-containing proteinF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.H.G.S.X.
0.2217.50.79At3g58180824987PBS lyase HEAT-like repeat-containing proteinF:lyase activity, binding;P:biological_process unknown;C:phycobilisome;BOMFAPO.I.H.G.S.X.
0.2217.50.82At5g06360830524ribosomal protein S8e family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;MFOPABO.I.H.G.S.X.
0.2217.50.79At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVO.I.H.G.S.X.
0.2217.50.80At2g45520819160unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.2217.50.78At3g57000824867nucleolar essential protein-relatedF:molecular_function unknown;P:unknown;C:nucleus;MOFAPBVO.I.H.G.S.X.
0.2217.50.79At4g18900827624transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAVO.I.H.G.S.X.
0.2115.80.79At2g238908169215' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBOO.I.H.G.S.X.
0.2115.80.80At1g32580840152plastid developmental protein DAG, putativeF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.2115.80.78At3g20330821577aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB)encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesisO.I.H.G.S.X.
0.2115.80.80At4g0223082809960S ribosomal protein L19 (RPL19C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.2115.80.80At4g26430828749CSN6Bone of two genes encoding subunit 6 of COP9 signalosome complexO.I.H.G.S.X.
0.2115.80.79At4g15850827266ATRH1plant DEAD box-like RNA helicase.O.I.H.G.S.X.
0.2014.40.79At2g03670814895CDC48BCDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog BO.I.H.G.S.X.
0.2014.40.80At3g22320821801NRPB5Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.O.I.H.G.S.X.
0.2014.40.79At5g59180836036NRPB7Non-catalytic subunit specific to DNA-directed RNA polymerase II; the ortholog of budding yeast RPB7O.I.H.G.S.X.
0.1811.40.79At5g44320834457eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.1811.40.79At2g24990817038RIO1 family proteinF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.1811.40.81At2g29140817463APUM3 (Arabidopsis Pumilio 3)F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPBO.I.H.G.S.X.
0.1710.20.79At4g36420829794ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.1710.20.80At2g4571081917940S ribosomal protein S27 (RPS27A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus, plasma membrane;MOPFAO.I.H.G.S.X.
0.1710.20.79At3g02220821238unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.H.G.S.X.
0.1710.20.81At4g04950825835thioredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;BOMPFAVO.I.H.G.S.X.
0.1710.20.79At5g59460836065scarecrow-like transcription factor 11 (SCL11)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.H.G.S.X.
0.168.80.80At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.157.80.79At1g50380841460prolyl oligopeptidase family proteinF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;OBMPAFO.I.H.G.S.X.
0.146.80.79At3g12370820415ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPO.I.H.G.S.X.
0.146.80.79At4g01790827957ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-relatedF:ribonuclease P activity;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.146.80.79At2g38280818408FAC1 (EMBRYONIC FACTOR1)Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.O.I.H.G.S.X.
0.103.40.81At4g26310828737elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:unknown;BOPAO.I.H.G.S.X.
0.103.40.79At1g70190843355ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.103.40.79At2g45640819172SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.O.I.H.G.S.X.
0.092.80.81At2g38450818426-F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.092.80.79At2g19080816425metaxin-relatedF:molecular_function unknown;P:protein targeting to mitochondrion;C:mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plastid;MBPFOO.I.H.G.S.X.
0.082.30.80At1g23860838997RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.O.I.H.G.S.X.
0.082.30.78At4g18800827614ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.082.30.79At5g09450830804pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.071.90.80At4g17510827466UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3)F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;MFOPO.I.H.G.S.X.
0.071.90.79At4g31160829244DCAF1 (DDB1-CUL4 ASSOCIATED FACTOR 1)Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development.O.I.H.G.S.X.
0.071.90.79At5g20200832143nucleoporin-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
54.999.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
54.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.899.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
52.099.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.199.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.599.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
49.799.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.799.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.399.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
42.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.399.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.899.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.699.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.399.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.299.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.999.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.299.6GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
16.999.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
15.399.4GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
12.899.3GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
12.899.3E-MEXP-509-raw-cel-829148703
9.899.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.699.1GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0716GO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO
0.0596GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.Link to AmiGO
0.0372GO:0010311The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.048303020RNA polymeraseLink to KEGG PATHWAY
0.047400240Pyrimidine metabolismLink to KEGG PATHWAY
0.043703010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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