CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g37030

Gene name tRNA-splicing endonuclease positive effector-related

Module size 25 genes

NF 0.52

%ile 73.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.73 85.5 1.00 At5g37030 833673 tRNA-splicing endonuclease positive effector-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. H.G. S.X.
0.78 88.6 0.91 At1g34140 840313 PAB1 (POLY(A) BINDING PROTEIN 1) polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. O.I. H.G. S.X.
0.77 88.0 0.93 At3g42900 3769508 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.71 84.2 0.91 At3g43470 823432 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.69 82.9 0.90 At4g07360 3770409 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.91 At2g19420 816461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.64 78.9 0.90 At1g19460 838530 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAF O.I. H.G. S.X.
0.64 78.9 0.91 At1g37060 3767055 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 0.90 At3g55650 824731 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA O.I. H.G. S.X.
0.63 78.1 0.91 At2g11180 3768078 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 0.89 At3g47240 823877 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.54 69.5 0.90 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.92 At2g07738 815411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.50 65.3 0.90 At2g07713 815387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.50 65.3 0.92 At2g22940 816825 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.49 63.5 0.89 At2g06160 3767898 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.89 At2g10880 3768614 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.46 59.8 0.89 At3g32000 3769220 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 0.90 At2g07693 3768137 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.41 52.4 0.89 At1g12935 3766713 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 0.91 At1g42410 3767250 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 0.90 At1g57906 842163 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 0.89 At4g08000 3769934 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.36 43.6 0.90 At2g11680 3767822 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.89 At2g07701 815376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.73	85.5	1.00	At5g37030	833673	tRNA-splicing endonuclease positive effector-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	H.G.	S.X.
0.78	88.6	0.91	At1g34140	840313	PAB1 (POLY(A) BINDING PROTEIN 1)	polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family.	O.I.	H.G.	S.X.
0.77	88.0	0.93	At3g42900	3769508	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.71	84.2	0.91	At3g43470	823432	nucleic acid binding / zinc ion binding	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.69	82.9	0.90	At4g07360	3770409	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.91	At2g19420	816461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.64	78.9	0.90	At1g19460	838530	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAF	O.I.	H.G.	S.X.
0.64	78.9	0.91	At1g37060	3767055	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	0.90	At3g55650	824731	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA	O.I.	H.G.	S.X.
0.63	78.1	0.91	At2g11180	3768078	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	0.89	At3g47240	823877	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.54	69.5	0.90	At2g07685	3768050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.92	At2g07738	815411	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.50	65.3	0.90	At2g07713	815387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.50	65.3	0.92	At2g22940	816825	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.49	63.5	0.89	At2g06160	3767898	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.89	At2g10880	3768614	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.46	59.8	0.89	At3g32000	3769220	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.90	At2g07693	3768137	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.41	52.4	0.89	At1g12935	3766713	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	0.91	At1g42410	3767250	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	0.90	At1g57906	842163	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.38	46.7	0.89	At4g08000	3769934	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.36	43.6	0.90	At2g11680	3767822	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.89	At2g07701	815376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
117.2 99.9 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
91.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
69.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.3 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.5 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.4 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.2 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.8 99.8 E-MEXP-807-raw-cel-1173273196
59.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.7 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.6 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.7 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2 99.8 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.2 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.9 99.8 E-MEXP-807-raw-cel-1173273088
37.0 99.7 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.6 99.7 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.6 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.5 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.3 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.0 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.9 99.7 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.3 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.1 99.7 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
27.0 99.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
26.7 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.6 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.1 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.7 99.6 E-ATMX-35-raw-cel-1574334848
21.6 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4 99.6 E-MEXP-807-raw-cel-1173273116
20.9 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.8 99.6 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
20.3 99.6 E-MEXP-807-raw-cel-1173273170
20.0 99.6 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
20.0 99.6 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
18.7 99.5 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
18.2 99.5 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
18.1 99.5 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.0 99.5 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
17.4 99.5 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
17.1 99.5 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
15.8 99.5 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
15.8 99.5 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
15.6 99.5 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.2 99.4 E-ATMX-35-raw-cel-1574334864
15.0 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.7 99.4 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
14.6 99.4 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
14.6 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
14.5 99.4 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.8 99.4 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
12.8 99.3 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
12.7 99.3 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
12.5 99.3 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.4 99.3 E-MEXP-807-raw-cel-1173273223
11.8 99.3 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.6 99.3 E-ATMX-35-raw-cel-1574334880
9.9 99.1 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.0 99.1 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
8.9 99.0 GSM258003 LMPC-derived phloem_2 GSE10247 Transcriptome analysis of the Arabidopsis phloem
8.8 99.0 E-MEXP-807-raw-cel-1173273060

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
117.2	99.9	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
91.5	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
73.9	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
69.7	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.3	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
63.5	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.4	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
62.3	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.2	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.8	99.8	E-MEXP-807-raw-cel-1173273196
59.7	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.9	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.7	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
53.6	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.7	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2	99.8	GSM184478	Lateral Root Cap root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
41.2	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
37.9	99.8	E-MEXP-807-raw-cel-1173273088
37.0	99.7	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.6	99.7	GSM184483	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.6	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.5	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.3	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.0	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.9	99.7	GSM133775	Lindsey_1-27_torpedo-meristem_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.3	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
27.1	99.7	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
27.0	99.7	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
26.7	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.6	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.1	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.7	99.6	E-ATMX-35-raw-cel-1574334848
21.6	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.4	99.6	E-MEXP-807-raw-cel-1173273116
20.9	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.8	99.6	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
20.3	99.6	E-MEXP-807-raw-cel-1173273170
20.0	99.6	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
20.0	99.6	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
18.7	99.5	GSM133304	RIKEN-NAKABAYASHI1B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
18.2	99.5	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
18.1	99.5	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.0	99.5	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
17.4	99.5	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
17.1	99.5	GSM131704	ATGE_83_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
15.8	99.5	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
15.8	99.5	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
15.6	99.5	GSM184480	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.2	99.4	E-ATMX-35-raw-cel-1574334864
15.0	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.7	99.4	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
14.6	99.4	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
14.6	99.4	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
14.5	99.4	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.8	99.4	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.8	99.3	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.7	99.3	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.5	99.3	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.4	99.3	E-MEXP-807-raw-cel-1173273223
11.8	99.3	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.6	99.3	E-ATMX-35-raw-cel-1574334880
9.9	99.1	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.0	99.1	GSM184907	Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
8.9	99.0	GSM258003	LMPC-derived phloem_2	GSE10247	Transcriptome analysis of the Arabidopsis phloem
8.8	99.0	E-MEXP-807-raw-cel-1173273060

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.028 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.028	1	GO:0006096	The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.022 1 00620 Pyruvate metabolism
0.020 1 00710 Carbon fixation in photosynthetic organisms
0.018 1 00010 Glycolysis / Gluconeogenesis

SF	Genes	KEGG ID	Pathway name
0.022	1	00620	Pyruvate metabolism
0.020	1	00710	Carbon fixation in photosynthetic organisms
0.018	1	00010	Glycolysis / Gluconeogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g37030
Gene name	tRNA-splicing endonuclease positive effector-related
Module size	25 genes
NF	0.52
%ile	73.5

Co-expression analysis

Gene ID At5g37030 Gene name tRNA-splicing endonuclease positive effector-related Module size 25 genes NF 0.52 %ile 73.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.022100620Pyruvate metabolism0.020100710Carbon fixation in photosynthetic organisms0.018100010Glycolysis / Gluconeogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g37030

Gene name tRNA-splicing endonuclease positive effector-related

Module size 25 genes

NF 0.52

%ile 73.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.022 1 00620 Pyruvate metabolism
0.020 1 00710 Carbon fixation in photosynthetic organisms
0.018 1 00010 Glycolysis / Gluconeogenesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays