Co-expression analysis

Gene ID At5g36150
Gene name ATPEN3 (putative pentacyclic triterpene synthase 3)
Module size 29 genes
NF 0.27
%ile 31.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g36150833612ATPEN3 (putative pentacyclic triterpene synthase 3)F:lupeol synthase activity, catalytic activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMO.I.H.G.S.X.
0.5974.70.83At3g28470822477TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.5166.30.83At2g22350816767transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.83At5g282803770784-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.82At3g25850822179DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.4558.30.84At1g127203766711transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.83At1g14470838009pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.3948.40.81At2g31590817717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.3643.60.83At1g29780839856NLI interacting factor (NIF) family proteinF:phosphatase activity;P:unknown;C:mitochondrion;MOFPBVO.I.H.G.S.X.
0.3541.60.82At5g28130832887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.81At2g11360815607transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.81At5g348403771203transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.84At2g107403767791transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.82At5g351503771255transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.30.83At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.83At1g52640841696pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.2522.60.82At2g076603767968transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.83At3g42730823306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.81At2g18530816368protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.2319.30.81At1g36756840586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2217.50.81At5g28930833018transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.80.81At4g28620828980ATM2 (ABC TRANSPORTER OF THE MITOCHONDRION 2)half-molecule ABC transporter ATM2O.I.H.G.S.X.
0.2014.40.81At4g088903769919transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.81At2g14010815885transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.168.80.81At1g09220837442pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cytosolic ribosome;POMFO.I.H.G.S.X.
0.168.80.81At1g01410837547APUM22 (Arabidopsis Pumilio 22)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.157.80.81At3g42600823272transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.80.81At5g65570836683pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.146.80.81At5g08490830748pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.899.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.999.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.899.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.199.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.799.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
24.099.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.899.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.199.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.099.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.099.6E-MEXP-1592-raw-cel-1617526984
17.999.5GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.399.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.199.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.799.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.399.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.999.3E-MEXP-1592-raw-cel-1617526920
11.599.3GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
11.199.2GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.899.2GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
10.799.2GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
10.599.2E-ATMX-1-raw-cel-1112746154
9.699.1E-MEXP-1592-raw-cel-1617526952
9.199.1GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.999.0GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
8.899.0E-MEXP-1592-raw-cel-1617526848
8.799.0E-MEXP-1592-raw-cel-1617526824
8.799.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.799.0GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0631GO:0048658The process whose specific outcome is the progression of the tapetal layer over time, from its formation to the mature structure.Link to AmiGO
0.0541GO:0055046The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure.Link to AmiGO
0.0511GO:0019745The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.036100100Steroid biosynthesisLink to KEGG PATHWAY
0.009101062Biosynthesis of terpenoids and steroidsLink to KEGG PATHWAY
0.006101070Biosynthesis of plant hormonesLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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