CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At5g36110

Gene name CYP716A1

Module size 7 genes

NF 0.36

%ile 48.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.16 8.8 1.00 At5g36110 833607 CYP716A1 member of CYP716A O.I. H.G. S.X.
0.77 88.0 0.50 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV O.I. H.G. S.X.
0.55 70.6 0.49 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. H.G. S.X.
0.46 59.8 0.49 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.31 33.8 0.48 At1g53270 841761 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. H.G. S.X.
0.29 30.3 0.48 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.25 22.6 0.51 At2g43390 818940 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.16	8.8	1.00	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	H.G.	S.X.
0.77	88.0	0.50	At5g19410	832061	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV	O.I.	H.G.	S.X.
0.55	70.6	0.49	At3g50400	824204	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	H.G.	S.X.
0.46	59.8	0.49	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.31	33.8	0.48	At1g53270	841761	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	H.G.	S.X.
0.29	30.3	0.48	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	H.G.	S.X.
0.25	22.6	0.51	At2g43390	818940	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
130.5 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
102.6 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
91.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
81.5 99.9 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
72.5 99.9 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.2 99.9 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
69.3 99.9 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.0 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
35.2 99.7 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
34.4 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.6 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.5 99.7 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
31.3 99.7 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.9 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.7 99.7 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.9 99.7 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.6 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.0 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.7 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.6 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.1 99.7 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
27.3 99.7 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
27.3 99.7 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
27.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.3 99.7 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
25.7 99.7 GSM134313 Penfield_1-15_embryo-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
25.3 99.6 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
25.1 99.6 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.6 99.6 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
24.1 99.6 GSM134316 Penfield_1-18_embryo-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.0 99.6 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
23.4 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0 99.6 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.8 99.6 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
22.1 99.6 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
21.8 99.6 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
21.7 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.6 99.6 GSM134314 Penfield_1-16_embryo-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.4 99.6 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
21.1 99.6 GSM134311 Penfield_1-13_embryo-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.1 99.6 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
19.6 99.6 GSM134315 Penfield_1-17_embryo-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
19.3 99.6 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
19.3 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.7 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.5 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.5 99.5 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
18.0 99.5 GSM134312 Penfield_1-14_embryo-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
17.9 99.5 E-MEXP-1138-raw-cel-1432772618
17.9 99.5 E-MEXP-1138-raw-cel-1432772554
17.0 99.5 E-MEXP-1138-raw-cel-1432773226
16.9 99.5 E-MEXP-1138-raw-cel-1432773162
16.4 99.5 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.3 99.5 E-MEXP-1138-raw-cel-1432772682
16.2 99.5 GSM253157 2h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.6 99.5 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
15.5 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.4 99.5 E-MEXP-1304-raw-cel-1530618308
15.3 99.4 E-MEXP-1138-raw-cel-1432773354
15.1 99.4 E-MEXP-1138-raw-cel-1432772970
15.1 99.4 GSM77182 00h pgm (Col-0) mutant replicate B GSE3424 Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
14.9 99.4 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.8 99.4 E-MEXP-1138-raw-cel-1432772778
14.4 99.4 E-MEXP-1138-raw-cel-1432772650
14.2 99.4 E-MEXP-1138-raw-cel-1432772906
14.1 99.4 E-MEXP-1138-raw-cel-1432773386
14.1 99.4 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.0 99.4 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.0 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.9 99.4 E-MEXP-1138-raw-cel-1432773034
13.8 99.4 E-MEXP-1138-raw-cel-1432773194
13.7 99.4 E-MEXP-1138-raw-cel-1432772522
13.7 99.4 E-MEXP-1138-raw-cel-1432772586
13.5 99.4 E-MEXP-1138-raw-cel-1432772842
13.5 99.4 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
12.9 99.3 E-MEXP-1138-raw-cel-1432772938
12.9 99.3 E-MEXP-1138-raw-cel-1432772746
12.8 99.3 E-MEXP-1138-raw-cel-1432772714
12.7 99.3 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
12.7 99.3 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.6 99.3 E-MEXP-1138-raw-cel-1432773098
12.5 99.3 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
12.3 99.3 E-MEXP-285-raw-cel-440782725
12.1 99.3 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
12.1 99.3 E-MEXP-1138-raw-cel-1432773002
12.0 99.3 GSM77181 00h pgm (Col-0) mutant replicate A GSE3424 Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
12.0 99.3 E-MEXP-1138-raw-cel-1432772810
11.8 99.3 E-MEXP-513-raw-cel-829814366
11.5 99.3 E-MEXP-1138-raw-cel-1432773130
11.4 99.3 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2 99.2 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.0 99.2 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.0 99.2 E-MEXP-1138-raw-cel-1432772874
10.9 99.2 E-MEXP-1304-raw-cel-1530618514
10.9 99.2 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.6 99.2 E-MEXP-1138-raw-cel-1432773290
10.6 99.2 GSM239254 CaMV::DME stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.3 99.2 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
10.3 99.2 E-MEXP-1138-raw-cel-1432773258
10.2 99.2 E-MEXP-285-raw-cel-440782791
10.1 99.2 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
10.1 99.2 E-MEXP-1138-raw-cel-1432773066
10.0 99.2 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
9.6 99.1 E-MEXP-1138-raw-cel-1432773322
9.4 99.1 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.2 99.1 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.2 99.1 GSM253156 end of the night C GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
9.1 99.1 GSM134775 Col-0_5day_+lincomycin_rep1 GSE5770 col0,gun1,abi4-102, w/wo lincomycin
9.1 99.1 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.0 99.1 E-MEXP-1304-raw-cel-1530619115

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
130.5	99.9	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
102.6	99.9	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
91.8	99.9	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
81.5	99.9	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
72.5	99.9	GSM133963	Fukuda_1-8_6B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
72.2	99.9	GSM133962	Fukuda_1-7_6A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
69.3	99.9	GSM133775	Lindsey_1-27_torpedo-meristem_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.0	99.8	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
35.2	99.7	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
34.4	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.6	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.5	99.7	GSM131704	ATGE_83_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
31.3	99.7	GSM133965	Fukuda_1-10_8B_Rep2_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.9	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.7	99.7	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.9	99.7	GSM154507	Arabidopsis growing pollen tubes rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
29.6	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.0	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.7	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.6	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
28.1	99.7	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
27.3	99.7	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
27.3	99.7	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
27.1	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.3	99.7	GSM134302	Penfield_1-4_endosperm-ABA_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
25.7	99.7	GSM134313	Penfield_1-15_embryo-ABA_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
25.3	99.6	GSM184920	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
25.1	99.6	GSM133964	Fukuda_1-9_8A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
24.6	99.6	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
24.1	99.6	GSM134316	Penfield_1-18_embryo-PAC_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.0	99.6	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
23.4	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.0	99.6	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
22.8	99.6	GSM134304	Penfield_1-6_endosperm-ABA_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
22.1	99.6	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
21.8	99.6	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
21.7	99.6	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.6	99.6	GSM134314	Penfield_1-16_embryo-PAC_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.4	99.6	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
21.1	99.6	GSM134311	Penfield_1-13_embryo-ABA_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.1	99.6	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
19.6	99.6	GSM134315	Penfield_1-17_embryo-PAC_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
19.3	99.6	GSM134303	Penfield_1-5_endosperm-ABA_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
19.3	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.7	99.5	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.5	99.5	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.5	99.5	GSM10454	WT Post-Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
18.0	99.5	GSM134312	Penfield_1-14_embryo-ABA_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
17.9	99.5	E-MEXP-1138-raw-cel-1432772618
17.9	99.5	E-MEXP-1138-raw-cel-1432772554
17.0	99.5	E-MEXP-1138-raw-cel-1432773226
16.9	99.5	E-MEXP-1138-raw-cel-1432773162
16.4	99.5	GSM154508	Arabidopsis growing pollen tubes rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
16.3	99.5	E-MEXP-1138-raw-cel-1432772682
16.2	99.5	GSM253157	2h into an extended night	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
15.6	99.5	GSM10456	WT Post-Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
15.5	99.5	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.4	99.5	E-MEXP-1304-raw-cel-1530618308
15.3	99.4	E-MEXP-1138-raw-cel-1432773354
15.1	99.4	E-MEXP-1138-raw-cel-1432772970
15.1	99.4	GSM77182	00h pgm (Col-0) mutant replicate B	GSE3424	Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
14.9	99.4	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
14.8	99.4	E-MEXP-1138-raw-cel-1432772778
14.4	99.4	E-MEXP-1138-raw-cel-1432772650
14.2	99.4	E-MEXP-1138-raw-cel-1432772906
14.1	99.4	E-MEXP-1138-raw-cel-1432773386
14.1	99.4	GSM154504	Arabidopsis desiccated mature pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.0	99.4	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
14.0	99.4	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.9	99.4	E-MEXP-1138-raw-cel-1432773034
13.8	99.4	E-MEXP-1138-raw-cel-1432773194
13.7	99.4	E-MEXP-1138-raw-cel-1432772522
13.7	99.4	E-MEXP-1138-raw-cel-1432772586
13.5	99.4	E-MEXP-1138-raw-cel-1432772842
13.5	99.4	GSM133117	RIKEN-YAMAUCHI1A	GSE5687	AtGenExpress: Different temperature treatment of seeds
12.9	99.3	E-MEXP-1138-raw-cel-1432772938
12.9	99.3	E-MEXP-1138-raw-cel-1432772746
12.8	99.3	E-MEXP-1138-raw-cel-1432772714
12.7	99.3	GSM142736	DH001_ATH1_A3-TCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
12.7	99.3	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.6	99.3	E-MEXP-1138-raw-cel-1432773098
12.5	99.3	GSM142739	DH001_ATH1_A6-TCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
12.3	99.3	E-MEXP-285-raw-cel-440782725
12.1	99.3	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
12.1	99.3	E-MEXP-1138-raw-cel-1432773002
12.0	99.3	GSM77181	00h pgm (Col-0) mutant replicate A	GSE3424	Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
12.0	99.3	E-MEXP-1138-raw-cel-1432772810
11.8	99.3	E-MEXP-513-raw-cel-829814366
11.5	99.3	E-MEXP-1138-raw-cel-1432773130
11.4	99.3	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.2	99.2	GSM133966	Fukuda_1-11_10A_Rep1_ATH1	GSE5748	In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.0	99.2	GSM133303	RIKEN-NAKABAYASHI1A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
11.0	99.2	E-MEXP-1138-raw-cel-1432772874
10.9	99.2	E-MEXP-1304-raw-cel-1530618514
10.9	99.2	GSM239252	Columbia glabrous (C24) wild type stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.6	99.2	E-MEXP-1138-raw-cel-1432773290
10.6	99.2	GSM239254	CaMV::DME stamen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
10.3	99.2	GSM184919	Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	E-MEXP-1138-raw-cel-1432773258
10.2	99.2	E-MEXP-285-raw-cel-440782791
10.1	99.2	GSM134307	Penfield_1-9_endosperm-PAC_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
10.1	99.2	E-MEXP-1138-raw-cel-1432773066
10.0	99.2	GSM253158	4h into an extended nightA	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
9.6	99.1	E-MEXP-1138-raw-cel-1432773322
9.4	99.1	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.2	99.1	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.2	99.1	GSM253156	end of the night C	GSE10016	Expression data of Arabidopsis thaliana rosettes in an extended night
9.1	99.1	GSM134775	Col-0_5day_+lincomycin_rep1	GSE5770	col0,gun1,abi4-102, w/wo lincomycin
9.1	99.1	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.0	99.1	E-MEXP-1304-raw-cel-1530619115

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At5g36110
Gene name	CYP716A1
Module size	7 genes
NF	0.36
%ile	48.3

Co-expression analysis

Gene ID At5g36110 Gene name CYP716A1 Module size 7 genes NF 0.36 %ile 48.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At5g36110

Gene name CYP716A1

Module size 7 genes

NF 0.36

%ile 48.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays