Co-expression analysis

Gene ID At5g28800
Gene name unknown protein
Module size 42 genes
NF 0.56
%ile 77.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7284.81.00At5g28800832996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.85At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyO.I.H.G.S.X.
0.6781.60.85At5g44850834515-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.H.G.S.X.
0.6478.90.85At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPO.I.H.G.S.X.
0.6378.10.84At5g15380831390DRM1 (domains rearranged methylase 1)Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.O.I.H.G.S.X.
0.6378.10.87At2g35460818111harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6378.10.86At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.H.G.S.X.
0.6378.10.86At2g27520817298F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.6378.10.85At1g67220843042HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2)F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPFO.I.H.G.S.X.
0.6277.30.85At2g03580814887F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6277.30.84At4g17580827475Bax inhibitor-1 family protein / BI-1 family proteinF:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPVO.I.H.G.S.X.
0.6176.70.85At2g24255816960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6176.70.84At2g355903768541-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.85At4g17130--O.I.H.G.S.X.
0.5974.70.85At2g261352745561zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:membrane;MFOPVO.I.H.G.S.X.
0.5974.70.84At5g52975835376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5873.80.84At5g22680832331-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5773.80.84At4g03950825705glucose-6-phosphate/phosphate translocator, putativeF:glucose-6-phosphate transmembrane transporter activity, glucose transmembrane transporter activity;P:hexose phosphate transport;C:unknown;PMOFBO.I.H.G.S.X.
0.5773.80.89At4g05620825934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.80.84At2g33260817889tryptophan/tyrosine permease family proteinF:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFO.I.H.G.S.X.
0.5673.00.84At2g38100818388proton-dependent oligopeptide transport (POT) family proteinF:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOFO.I.H.G.S.X.
0.5673.00.85At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBO.I.H.G.S.X.
0.5673.00.84At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.H.G.S.X.
0.5673.00.84At2g31420817700DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.86At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5570.60.84At3g10830820252unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.84At4g106903770312transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.85At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBO.I.H.G.S.X.
0.5469.50.84At3g15910820834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5368.60.87At1g75470843883ATPUP15Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.5368.60.84At5g11050830972MYB64 (myb domain protein 64)Member of R2R3-MYB transcription factor gene family.O.I.H.G.S.X.
0.5368.60.84At2g15260816015zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;POFMBO.I.H.G.S.X.
0.5267.40.84At1g16940838265F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.5267.40.85At1g28220839716ATPUP3Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.H.G.S.X.
0.5267.40.84At5g48420834897unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5166.30.85At2g188203768266transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.85At5g12240831099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.84At3g20700821617F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.20.87At3g42820823326transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.84At4g33870829530peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.H.G.S.X.
0.4050.80.85At1g20800838671F-box family proteinF-box family proteinO.I.H.G.S.X.
0.4050.80.85At3g46340823779leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.399.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
36.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.299.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.399.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.799.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.799.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.599.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.499.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.099.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.899.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.499.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.299.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.899.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.099.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.899.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.499.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.499.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.399.5GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.299.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.599.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.799.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.099.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.799.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
9.199.1GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0632GO:0006863The directed movement of purines, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of, within or between cells.Link to AmiGO
0.0451GO:0043066Any process that stops, prevents or reduces the frequency, rate or extent of cell death by apoptosis.Link to AmiGO
0.0441GO:0015712The directed movement of hexose phosphate into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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