Co-expression analysis

Gene ID At5g28080
Gene name WNK9
Module size 13 genes
NF 0.29
%ile 35.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4253.91.00At5g28080832881WNK9Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.O.I.H.G.S.X.
0.5570.60.72At5g44160834439NUC (nutcracker)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFO.I.H.G.S.X.
0.4050.80.74At4g31100829237wall-associated kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.3541.60.71At5g65790836708MYB68 (MYB DOMAIN PROTEIN 68)Encodes a putative MYB transcription factor.O.I.H.G.S.X.
0.3133.80.73At3g09960820157calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFAVO.I.H.G.S.X.
0.3032.10.71At5g49780835041ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.H.G.S.X.
0.2930.30.73At1g71692843497AGL12 (AGAMOUS-LIKE 12)Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.O.I.H.G.S.X.
0.2726.20.74At5g16900831553leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.2624.40.73At2g28970817446leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.2624.40.73At1g18860838467WRKY61member of WRKY Transcription Factor; Group II-bO.I.H.G.S.X.
0.2522.60.71At5g57770835885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.1811.40.70At2g10560815517unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.1811.40.70At3g46730823826disease resistance protein (CC-NBS class), putativeF:ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
165.8100.0GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
112.699.9GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
41.899.8E-MEXP-1451-raw-cel-1585200202
41.199.8E-MEXP-1451-raw-cel-1585200170
35.399.7GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
29.699.7E-MEXP-1451-raw-cel-1585200234
29.499.7GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
28.399.7GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
25.999.7E-MEXP-1138-raw-cel-1432773322
25.799.7GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
24.499.6GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
23.899.6E-MEXP-1138-raw-cel-1432773290
23.499.6E-MEXP-1451-raw-cel-1585200266
22.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.299.6E-MEXP-1138-raw-cel-1432773258
19.899.6GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
19.499.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.199.6GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
18.899.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.499.5E-MEXP-1138-raw-cel-1432773386
18.299.5E-MEXP-1138-raw-cel-1432773226
17.899.5GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
17.799.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.899.5E-MEXP-1138-raw-cel-1432773066
16.099.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.899.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.799.5GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.299.4E-MEXP-1138-raw-cel-1432772746
15.299.4E-MEXP-1138-raw-cel-1432772778
15.299.4GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.199.4E-MEXP-1138-raw-cel-1432773162
15.199.4E-MEXP-1138-raw-cel-1432773354
14.999.4E-MEXP-1138-raw-cel-1432772810
14.999.4E-MEXP-1138-raw-cel-1432773034
14.899.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.899.4GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.799.4E-MEXP-1138-raw-cel-1432772714
14.799.4E-MEXP-1138-raw-cel-1432772682
14.699.4E-MEXP-1138-raw-cel-1432773194
14.599.4E-MEXP-1138-raw-cel-1432772586
14.499.4GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
14.399.4GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
14.299.4E-MEXP-1138-raw-cel-1432772650
13.999.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.899.4E-MEXP-1138-raw-cel-1432772906
13.899.4E-MEXP-1138-raw-cel-1432772874
13.799.4E-MEXP-1138-raw-cel-1432772618
13.599.4GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.299.4E-MEXP-1138-raw-cel-1432772554
12.999.3GSM62699arf6/arf6 ARF8/arf8 flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
12.999.3GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
12.699.3E-MEXP-1138-raw-cel-1432772522
12.499.3GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.399.3GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.299.3E-MEXP-1138-raw-cel-1432773098
12.299.3E-MEXP-1138-raw-cel-1432772842
12.199.3E-MEXP-1138-raw-cel-1432772938
12.199.3GSM62695Columbia flowers_stage 11-12GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
11.899.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.799.3E-MEXP-1443-raw-cel-1581869515
11.599.3E-MEXP-1138-raw-cel-1432773130
11.499.3GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.499.3E-MEXP-1138-raw-cel-1432773002
11.399.3GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.399.3GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.299.2GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.199.2GSM131687ATGE_76_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
10.899.2GSM131686ATGE_76_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
10.899.2GSM131585ATGE_34_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.799.2GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.599.2E-MEXP-1138-raw-cel-1432772970
10.399.2E-MEXP-285-raw-cel-440782725
10.399.2GSM131587ATGE_34_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.299.2GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.199.2GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.199.2GSM106916opr3_JA_22 hrs_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
10.199.2GSM131586ATGE_34_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.099.2GSM131685ATGE_76_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
10.099.2E-MEXP-285-raw-cel-440782791
9.999.1GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.699.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.399.1GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
9.099.1GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.799.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.699.0GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0411GO:0010228The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.Link to AmiGO
0.0282GO:0007169The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.Link to AmiGO
0.0211GO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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