Co-expression analysis

Gene ID At5g27150
Gene name NHX1 (NA+/H+ EXCHANGER)
Module size 28 genes
NF 0.31
%ile 39.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At5g27150832773NHX1 (NA+/H+ EXCHANGER)Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development.O.I.H.G.S.X.
0.4761.20.91At3g03860821101ATAPRL5 (APR-like 5)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.H.G.S.X.
0.4761.20.91At4g38250829982amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAVO.I.H.G.S.X.
0.4558.30.91At3g04090819564SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.O.I.H.G.S.X.
0.4253.90.92At4g39080830063VHA-A3 (VACUOLAR PROTON ATPASE A3)Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.O.I.H.G.S.X.
0.3948.40.90At1g71090843449auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOBAO.I.H.G.S.X.
0.3846.70.90At1g32400840133TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.O.I.H.G.S.X.
0.3745.00.92At4g32530829388vacuolar ATP synthase, putative / V-ATPase, putativeF:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBAO.I.H.G.S.X.
0.3643.60.89At3g28710822502H+-transporting two-sector ATPase, putativeF:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPABO.I.H.G.S.X.
0.3541.60.91At4g21790828267TOM1 (TOBAMOVIRUS MULTIPLICATION 1)encodes a host factor that is required for TMV virus multiplication.O.I.H.G.S.X.
0.3541.60.91At1g16180838187TMS membrane family protein / tumour differentially expressed (TDE) family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.3439.80.91At4g28770828998-F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;POO.I.H.G.S.X.
0.3235.70.91At4g13020826915MHKEncodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.O.I.H.G.S.X.
0.3133.80.91At4g15470827218-F:unknown;P:unknown;C:unknown;BOMPFVO.I.H.G.S.X.
0.3133.80.91At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).O.I.H.G.S.X.
0.3032.10.89At5g16550831517unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.3032.10.89At1g03900839378ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.O.I.H.G.S.X.
0.3032.10.89At1g24350839051-F:unknown;P:biological_process unknown;C:unknown;BOPO.I.H.G.S.X.
0.2930.30.90At1g60430842338ARPC3 (actin-related protein C3)F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOPO.I.H.G.S.X.
0.2830.30.90At5g54680835557ILR3 (iaa-leucine resistant3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBAO.I.H.G.S.X.
0.2624.40.90At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.2319.30.89At2g16510816150vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)F:ATPase activity;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MOFBPAO.I.H.G.S.X.
0.2319.30.90At5g64500836571membrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAPO.I.H.G.S.X.
0.2319.30.90At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.2319.30.91At4g32600829395zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.2115.80.89At2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.S.X.
0.146.80.90At3g42050823170vacuolar ATP synthase subunit H family proteinF:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOPO.I.H.G.S.X.
0.124.90.90At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
53.499.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
50.399.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.899.8GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
47.799.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.899.8GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
40.799.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.799.8GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
38.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.899.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.099.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.799.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.599.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
33.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.399.7GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
25.099.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
23.999.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
23.099.6GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
22.899.6GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
20.099.6GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.199.4E-MEXP-509-raw-cel-829148703
14.699.4GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
13.899.4GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
12.799.3GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
12.699.3GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
12.499.3GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.699.3GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
11.399.3GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
10.699.2GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
10.499.2GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.999.1GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.799.1GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.699.1GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.499.1GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cellsLink to GEO
9.099.1GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.099.1GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1415GO:0015986The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.Link to AmiGO
0.1252GO:0046786The process of organizing and assembling viral replication proteins in preparation for viral replication.Link to AmiGO
0.0691GO:0006858The transport of substances that occurs outside cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.047400190Oxidative phosphorylationLink to KEGG PATHWAY
0.006401100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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